KEGG   Dictyostelium discoideum (cellular slime mold): DDB_G0288065
Entry
DDB_G0288065      CDS       T00245                                 
Symbol
cdcD
Name
(RefSeq) CDC48 family AAA ATPase
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
ddi  Dictyostelium discoideum (cellular slime mold)
Pathway
ddi04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:ddi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    DDB_G0288065 (cdcD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ddi03019]
    DDB_G0288065 (cdcD)
   03009 Ribosome biogenesis [BR:ddi03009]
    DDB_G0288065 (cdcD)
   04131 Membrane trafficking [BR:ddi04131]
    DDB_G0288065 (cdcD)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ddi04147]
    DDB_G0288065 (cdcD)
Messenger RNA biogenesis [BR:ddi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     DDB_G0288065 (cdcD)
Ribosome biogenesis [BR:ddi03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    DDB_G0288065 (cdcD)
Membrane trafficking [BR:ddi04131]
 SNARE
  SNARE associated proteins
   Others
    DDB_G0288065 (cdcD)
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    DDB_G0288065 (cdcD)
Exosome [BR:ddi04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   DDB_G0288065 (cdcD)
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_2 AAA_16 AAA_33 AAA_5 CDC48_2 AAA_14 AAA_22 NPHP3_N TIP49 RNA_helicase AAA_28 Mg_chelatase nSTAND3 ATPase_2 AAA_17 Parvo_NS1 Vps4_C ABC_tran IstB_IS21 AAA_18 Viral_helicase1 AAA_7 NB-ARC NACHT Rad17 TsaE AAA_24 AAA_lid_PRS2_C DUF815 ResIII Sigma54_activ_2 Zeta_toxin tRNA_lig_kinase
Other DBs
NCBI-GeneID: 8626465
NCBI-ProteinID: XP_636910
dictyBase: DDB_G0288065
UniProt: P90532
LinkDB
Position
5:1118593..1121222
AA seq 793 aa
MATIEDTSKDNNNPILERKKAPNRLFVEEAINDDNSVVTLNPETMDQLQFFRGDTLLIKG
KKRRDTVCIVLSDPTIDPSKIRMNKVVRNNLRVRLGDMISVHQCSDVKYGKRIHVLPIDD
TIEGLSGNLFDLYLKPYFLEAYRPVRKGDLFLVRGGMRAVEFKVVETDPGEYCIVAPETF
IHCEGEAVKREDEDRLDEVGYDDIGGVRKQLGQIRELVELPLRHPQLFKNIGVKPPKGIL
LYGPPGCGKTMIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIF
IDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGR
FDREIDITIPDATGRLEIMRIHTKNMKLDETVDLEAVANETHGYVGADLAALCTESALQC
IREKMDVIDLEDETISAEILESMSVTQDHFRTALTLSNPSALRETVVEVPTTTWEDIGGL
EGVKRELRETVQYPVEHPEKFRKFGMQPSKGVLFYGPPGCGKTLLAKAIANECQANFISI
KGPELLTMWFGESEANVRELFDKARQAAPCVLFFDELDSIARSRGSSQGDAGGAGDRVIN
QILTEMDGMNAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDLPSRVAILKACLN
KSPVAKDVDLEFLGQKTQGFSGADLTEICQRACKLAIRESIEKDIESTKARQESGDTKME
DDSVDPVPEITRDHFQEAMRSARRSVSDNDIRKYESFAQTLVQSRGLGNNFKFPDQESSG
QFNQDQSDDLFSN
NT seq 2382 nt   +upstreamnt  +downstreamnt
atggcaacaattgaagatacttcaaaagataataacaatccaattttagaacgtaaaaaa
gctccaaatagattatttgtagaagaagcaattaatgatgataattcagtagttacatta
aatccagagacaatggatcaattacaattctttagaggtgacacacttttaattaaaggt
aaaaagagaagagataccgtttgtattgtattgtcagatccaaccatcgatccatcaaag
atccgtatgaataaagttgtaagaaataatcttcgtgttagattaggtgacatgatttca
gttcaccaatgttcagatgttaaatatggcaaacgtattcatgtgttaccaattgatgat
accatagaaggtctcagtggcaatctctttgatctttacctcaaaccatactttttagaa
gcctaccgtccagtccgtaagggtgacttatttttagtacgtggtggtatgagagccgta
gaatttaaagttgtcgaaaccgacccaggtgaatattgtatcgttgcaccagagacattt
atacattgtgaaggtgaggcagtcaagagagaggatgaagaccgtctcgatgaggttggt
tacgatgatattggtggtgtaagaaagcaattgggtcaaattagagagttggtcgaactt
ccactccgtcatccacaactcttcaaaaatattggtgtcaaaccaccaaagggtattctt
ttatatggtccaccaggttgcggtaaaactatgattgccagagctgtcgccaatgaaaca
ggtgctttcttctttttaatcaatggtccagagattatgtccaaattagctggtgagtct
gaatccaaccttcgtaaggcctttgaagaggctgaaaagaatgcaccatccatcatcttt
atcgatgaaatcgattctatcgctccaaagagagagaaaactcaaggtgaagttgaacgt
cgtatcgtttcacaattgttaacattgatggatggtttgaaatcaagagcacatgtcatt
gttatgggtgccacaaatcgtccaaactcaatcgatccagctcttcgtcgtttcggtcgt
ttcgatcgtgaaatcgatatcaccattccagatgccactggtcgtttagaaatcatgaga
attcacaccaagaacatgaaactcgatgaaaccgtcgatttagaagccgttgccaatgaa
acccatggttatgtaggtgccgatcttgctgccctttgtaccgagtctgctctccaatgt
attcgtgagaagatggatgttattgatttagaagatgaaaccatctctgcagagatcctc
gaatcaatgtctgtcactcaagatcactttagaactgctctcaccctctccaatccatct
gctcttcgtgaaaccgtcgtcgaagttccaacaaccacttgggaagatattggtggtttg
gaaggtgtcaagagagaattacgtgaaaccgttcaatatccagtcgaacatccagagaaa
ttcagaaaattcggtatgcaaccatccaaaggtgtactcttttatggtccaccaggttgt
ggtaagactttattagccaaggccatcgccaacgaatgtcaagccaatttcatctctatc
aaaggtccagaactcttaaccatgtggtttggtgagtctgaagccaacgttcgtgaactc
tttgataaagctcgtcaagccgctccatgtgttttgttctttgatgagttggatagtatt
gcacgttctagaggttcatcacaaggtgatgctggtggtgctggtgatagagttatcaat
caaattttaactgaaatggatggtatgaacgccaagaagaacgttttcatcattggtgct
accaatagaccagatatcatcgatccagctatcctccgtccaggtcgtttagatcaactc
atttacattccattaccagatttaccatctcgtgttgccattctcaaggcttgtctcaat
aaatcaccagtcgccaaggatgtagatttagaatttttgggtcaaaagactcaaggtttc
tctggtgcagatttaactgaaatttgtcaacgtgcctgtaaattagctattcgtgaatcc
attgaaaaggatattgaatccaccaaagcccgtcaagaatctggtgataccaagatggaa
gatgactctgtcgatccagtaccagaaattactcgtgatcacttccaagaagccatgaga
tctgctcgtcgttctgtatccgataatgatattagaaaatatgaaagctttgctcaaact
ttagttcaatcaagaggtcttggtaataatttcaaattcccagatcaagaatcttcaggt
caattcaatcaagatcaatctgatgatcttttcagtaattaa

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