Dictyostelium discoideum (cellular slime mold): DDB_G0288065
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Entry
DDB_G0288065 CDS
T00245
Symbol
cdcD
Name
(RefSeq) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
DDB_G0288065 (cdcD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddi03019
]
DDB_G0288065 (cdcD)
03009 Ribosome biogenesis [BR:
ddi03009
]
DDB_G0288065 (cdcD)
04131 Membrane trafficking [BR:
ddi04131
]
DDB_G0288065 (cdcD)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ddi04147
]
DDB_G0288065 (cdcD)
Messenger RNA biogenesis [BR:
ddi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
DDB_G0288065 (cdcD)
Ribosome biogenesis [BR:
ddi03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
DDB_G0288065 (cdcD)
Membrane trafficking [BR:
ddi04131
]
SNARE
SNARE associated proteins
Others
DDB_G0288065 (cdcD)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
DDB_G0288065 (cdcD)
Exosome [BR:
ddi04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
DDB_G0288065 (cdcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_2
AAA_16
AAA_33
AAA_5
CDC48_2
AAA_14
AAA_22
NPHP3_N
TIP49
RNA_helicase
AAA_28
Mg_chelatase
nSTAND3
ATPase_2
AAA_17
Parvo_NS1
Vps4_C
ABC_tran
IstB_IS21
AAA_18
Viral_helicase1
AAA_7
NB-ARC
NACHT
Rad17
TsaE
AAA_24
AAA_lid_PRS2_C
DUF815
ResIII
Sigma54_activ_2
Zeta_toxin
tRNA_lig_kinase
Motif
Other DBs
NCBI-GeneID:
8626465
NCBI-ProteinID:
XP_636910
dictyBase:
DDB_G0288065
UniProt:
P90532
LinkDB
All DBs
Position
5:1118593..1121222
Genome browser
AA seq
793 aa
AA seq
DB search
MATIEDTSKDNNNPILERKKAPNRLFVEEAINDDNSVVTLNPETMDQLQFFRGDTLLIKG
KKRRDTVCIVLSDPTIDPSKIRMNKVVRNNLRVRLGDMISVHQCSDVKYGKRIHVLPIDD
TIEGLSGNLFDLYLKPYFLEAYRPVRKGDLFLVRGGMRAVEFKVVETDPGEYCIVAPETF
IHCEGEAVKREDEDRLDEVGYDDIGGVRKQLGQIRELVELPLRHPQLFKNIGVKPPKGIL
LYGPPGCGKTMIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIF
IDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGR
FDREIDITIPDATGRLEIMRIHTKNMKLDETVDLEAVANETHGYVGADLAALCTESALQC
IREKMDVIDLEDETISAEILESMSVTQDHFRTALTLSNPSALRETVVEVPTTTWEDIGGL
EGVKRELRETVQYPVEHPEKFRKFGMQPSKGVLFYGPPGCGKTLLAKAIANECQANFISI
KGPELLTMWFGESEANVRELFDKARQAAPCVLFFDELDSIARSRGSSQGDAGGAGDRVIN
QILTEMDGMNAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDLPSRVAILKACLN
KSPVAKDVDLEFLGQKTQGFSGADLTEICQRACKLAIRESIEKDIESTKARQESGDTKME
DDSVDPVPEITRDHFQEAMRSARRSVSDNDIRKYESFAQTLVQSRGLGNNFKFPDQESSG
QFNQDQSDDLFSN
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaattgaagatacttcaaaagataataacaatccaattttagaacgtaaaaaa
gctccaaatagattatttgtagaagaagcaattaatgatgataattcagtagttacatta
aatccagagacaatggatcaattacaattctttagaggtgacacacttttaattaaaggt
aaaaagagaagagataccgtttgtattgtattgtcagatccaaccatcgatccatcaaag
atccgtatgaataaagttgtaagaaataatcttcgtgttagattaggtgacatgatttca
gttcaccaatgttcagatgttaaatatggcaaacgtattcatgtgttaccaattgatgat
accatagaaggtctcagtggcaatctctttgatctttacctcaaaccatactttttagaa
gcctaccgtccagtccgtaagggtgacttatttttagtacgtggtggtatgagagccgta
gaatttaaagttgtcgaaaccgacccaggtgaatattgtatcgttgcaccagagacattt
atacattgtgaaggtgaggcagtcaagagagaggatgaagaccgtctcgatgaggttggt
tacgatgatattggtggtgtaagaaagcaattgggtcaaattagagagttggtcgaactt
ccactccgtcatccacaactcttcaaaaatattggtgtcaaaccaccaaagggtattctt
ttatatggtccaccaggttgcggtaaaactatgattgccagagctgtcgccaatgaaaca
ggtgctttcttctttttaatcaatggtccagagattatgtccaaattagctggtgagtct
gaatccaaccttcgtaaggcctttgaagaggctgaaaagaatgcaccatccatcatcttt
atcgatgaaatcgattctatcgctccaaagagagagaaaactcaaggtgaagttgaacgt
cgtatcgtttcacaattgttaacattgatggatggtttgaaatcaagagcacatgtcatt
gttatgggtgccacaaatcgtccaaactcaatcgatccagctcttcgtcgtttcggtcgt
ttcgatcgtgaaatcgatatcaccattccagatgccactggtcgtttagaaatcatgaga
attcacaccaagaacatgaaactcgatgaaaccgtcgatttagaagccgttgccaatgaa
acccatggttatgtaggtgccgatcttgctgccctttgtaccgagtctgctctccaatgt
attcgtgagaagatggatgttattgatttagaagatgaaaccatctctgcagagatcctc
gaatcaatgtctgtcactcaagatcactttagaactgctctcaccctctccaatccatct
gctcttcgtgaaaccgtcgtcgaagttccaacaaccacttgggaagatattggtggtttg
gaaggtgtcaagagagaattacgtgaaaccgttcaatatccagtcgaacatccagagaaa
ttcagaaaattcggtatgcaaccatccaaaggtgtactcttttatggtccaccaggttgt
ggtaagactttattagccaaggccatcgccaacgaatgtcaagccaatttcatctctatc
aaaggtccagaactcttaaccatgtggtttggtgagtctgaagccaacgttcgtgaactc
tttgataaagctcgtcaagccgctccatgtgttttgttctttgatgagttggatagtatt
gcacgttctagaggttcatcacaaggtgatgctggtggtgctggtgatagagttatcaat
caaattttaactgaaatggatggtatgaacgccaagaagaacgttttcatcattggtgct
accaatagaccagatatcatcgatccagctatcctccgtccaggtcgtttagatcaactc
atttacattccattaccagatttaccatctcgtgttgccattctcaaggcttgtctcaat
aaatcaccagtcgccaaggatgtagatttagaatttttgggtcaaaagactcaaggtttc
tctggtgcagatttaactgaaatttgtcaacgtgcctgtaaattagctattcgtgaatcc
attgaaaaggatattgaatccaccaaagcccgtcaagaatctggtgataccaagatggaa
gatgactctgtcgatccagtaccagaaattactcgtgatcacttccaagaagccatgaga
tctgctcgtcgttctgtatccgataatgatattagaaaatatgaaagctttgctcaaact
ttagttcaatcaagaggtcttggtaataatttcaaattcccagatcaagaatcttcaggt
caattcaatcaagatcaatctgatgatcttttcagtaattaa
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