Dictyostelium discoideum (cellular slime mold): DDB_G0289499
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Entry
DDB_G0289499 CDS
T00245
Symbol
lsm7
Name
(RefSeq) LSM domain-containing protein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03018
RNA degradation
ddi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DDB_G0289499 (lsm7)
09123 Folding, sorting and degradation
03018 RNA degradation
DDB_G0289499 (lsm7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddi03019
]
DDB_G0289499 (lsm7)
03041 Spliceosome [BR:
ddi03041
]
DDB_G0289499 (lsm7)
Messenger RNA biogenesis [BR:
ddi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
DDB_G0289499 (lsm7)
mRNA degradation factors
5'-3' decay
Lsm complex
DDB_G0289499 (lsm7)
Spliceosome [BR:
ddi03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
DDB_G0289499 (lsm7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
SM-ATX
InhA-like_MAM
Motif
Other DBs
NCBI-GeneID:
8627168
NCBI-ProteinID:
XP_636181
dictyBase:
DDB_G0289499
UniProt:
Q54HF6
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All DBs
Position
5:complement(2859869..2860286)
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AA seq
97 aa
AA seq
DB search
MTSSFNPKKESILDLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAED
PLITTDEKRFLGLVVCRGSSVMMVCPTEGCEPIDNPY
NT seq
294 nt
NT seq
+upstream
nt +downstream
nt
atgacatcttcattcaacccaaaaaaagaatcaattttagatctccaaaaatttttaggt
aaagaaatttgtgtaaaatttacaggtggtcgtgaagttcaaggtattttaaaaggatat
gaccaattagttaatattacattagatcaaactcaagaatttataagagatgcagaagat
ccattaattacaacagatgaaaaaagatttttaggtttagttgtttgtagaggtagcagt
gttatgatggtttgtccaactgaaggttgtgagccaattgataatccatattaa
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