Dictyostelium discoideum (cellular slime mold): DDB_G0289513
Help
Entry
DDB_G0289513 CDS
T00245
Symbol
rfa1
Name
(RefSeq) OB fold-containing protein, nucleic acid binding
KO
K07466
replication factor A1
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03030
DNA replication
ddi03420
Nucleotide excision repair
ddi03430
Mismatch repair
ddi03440
Homologous recombination
ddi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DDB_G0289513 (rfa1)
03420 Nucleotide excision repair
DDB_G0289513 (rfa1)
03430 Mismatch repair
DDB_G0289513 (rfa1)
03440 Homologous recombination
DDB_G0289513 (rfa1)
03460 Fanconi anemia pathway
DDB_G0289513 (rfa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ddi03000
]
DDB_G0289513 (rfa1)
03032 DNA replication proteins [BR:
ddi03032
]
DDB_G0289513 (rfa1)
03400 DNA repair and recombination proteins [BR:
ddi03400
]
DDB_G0289513 (rfa1)
Transcription factors [BR:
ddi03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
DDB_G0289513 (rfa1)
DNA replication proteins [BR:
ddi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
DDB_G0289513 (rfa1)
DNA repair and recombination proteins [BR:
ddi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
DDB_G0289513 (rfa1)
MMR (mismatch excision repair)
DDB_G0289513 (rfa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
DDB_G0289513 (rfa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
REPA_OB_2
tRNA_anti-codon
CDC24_OB3
Rep_fac-A_C
SHLD2_OB1
POT1
OB_MEIOB_N
DUF223
HypA
Motif
Other DBs
NCBI-GeneID:
8627182
NCBI-ProteinID:
XP_636195
dictyBase:
DDB_G0289513
UniProt:
Q54HE3
LinkDB
All DBs
Position
5:2891660..2893699
Genome browser
AA seq
679 aa
AA seq
DB search
MSINRGCLTNIINVDQTKRFQNIDCRVQVIKTKQSSSNNLEIHLSDQDHIFVGISKTDPS
NIPINSIVNLSDFSINFPKRFLNIVQFNVISQEKEIKTAQGKALTYHSVYKKTDGNSQNS
NQPQPQQQQQHQQQQQPRANTTMGSNSGIASRGNPLANQRNQAGAIRSNNNFGGNSNNNN
NNNYNNNNNNNNNNSGGGSNNFYADLSTQPITDIESIAPGMNVQFTIRAMVRNKQPLKSW
NKGANGEGKLFSMELVDSTGEIKCACFSDSSNPNNFINALYDCFENGKVYFIQRFFVKSA
NKLYNTLSHQSELSINSESRVMISPDQTQFTPHYNFKKIADIENLEKNDTVDVIGAITNI
DPIANLTSKQGKEFTKFGITIADDTNASINVVFWNEKATEVAPQVKVGDIIAMKGVKVSD
FSGRTLSYSFGSSFGLNDEQLQETSNLRAHLQNFDVNSLQSLTIASSYTQSSYEQVNLPI
FLIRTISEGSPLFISDPKTNKKLYRTIGQFQRVVPLSQAGEMDKGDEISSKMEWKYKACK
KCKKSCPEGSCPQCGSDDWEYAYRMSLKLSDGDDAISVEVMGKTGDRLFGKSAAELYQMN
QEQINEIFNTVLSNNYVVSLAPSSYMGSNGQTYNRFNVYDFANLYDTPNKLVSGPNPNAP
NQFQNYIESSFNDCRLFNE
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgtcaattaatcgtggatgtttaacaaatattattaacgttgaccaaactaaacgtttt
caaaatattgattgtagagttcaagttataaaaacaaaacaatcttcaagtaataattta
gaaattcatttatcagatcaagatcatatttttgttggtatttcaaagactgatccatca
aatattccaatcaattcaattgttaacctaagtgatttctctataaactttccaaaaaga
ttccttaatatcgttcaattcaatgttatctctcaagaaaaagaaattaaaaccgcacaa
ggtaaagctttaacatatcactcagtatataaaaaaacagatggcaatagtcaaaacagt
aatcaaccacaaccacaacaacaacaacaacatcaacaacaacaacaaccaagagcaaat
acaacaatgggctcaaatagtggaattgcatcaagaggtaatcctttagcaaatcaaaga
aatcaagcaggtgcaattagatcaaataataattttggtggtaatagtaataataataat
aataacaattataataacaacaataataataataataataatagtggtggtggttcaaat
aatttttatgcagatttatcaacacaaccaattacagatattgaaagtatagcacctggt
atgaatgttcaatttacaatcagagcaatggttagaaataaacaaccattaaaaagttgg
aataagggagccaatggtgaaggtaaactttttagtatggaattggtagatagtactggt
gaaattaaatgtgcttgtttctctgatagttcaaatccaaacaactttatcaatgcactc
tatgattgctttgaaaatggtaaagtctatttcattcaaagattctttgttaaaagtgca
aacaaattatacaatacactctcacatcaatctgaactcagtatcaactctgaatcaaga
gtaatgattagtccagatcaaacccaattcactccacattataatttcaaaaagattgct
gatattgaaaacttggaaaagaacgacactgtcgatgttattggtgccattacaaacatt
gatccaatcgccaatctcactagcaaacaaggtaaagaattcaccaaatttggtatcacc
atcgccgatgacaccaatgccagtatcaatgtcgttttttggaatgaaaaagccactgaa
gttgcacctcaagtaaaggttggtgatatcattgcaatgaagggtgtaaaagtttccgat
ttctctggtagaacactctcttatagttttggttcatcctttggattgaatgatgaacaa
cttcaagaaaccagtaatcttcgtgcacatttacaaaactttgatgtcaattctcttcaa
tcacttaccattgcaagttcctacacccaaagttcctatgaacaagttaatcttccaatc
tttttaatcagaaccatctctgaaggttcaccactcttcatttcagatccaaaaacaaat
aaaaaactctatcgtacaatcggtcaattccaacgtgtcgttcctttaagtcaagctgga
gagatggacaaaggtgatgaaatctcttccaaaatggaatggaaatataaagcatgcaaa
aaatgtaaaaaatcttgtccagaaggtagttgcccacaatgtggttcagatgattgggaa
tatgcttatcgtatgagtttgaaattatccgatggtgatgatgcaatcagtgttgaggta
atgggtaaaactggtgatagattatttggtaaaagcgctgcagaattatatcaaatgaat
caagaacaaatcaatgaaatctttaacactgtacttagtaacaattatgttgtttcactt
gccccaagctcttatatgggtagcaatggtcaaacttacaacagattcaatgtctatgat
tttgcaaatctctatgatacaccaaacaaactagtttctggtccaaatccaaatgctcca
aatcaattccaaaattatattgaaagtagttttaatgattgtagattatttaatgaataa
DBGET
integrated database retrieval system
