Dictyostelium discoideum (cellular slime mold): DDB_G0291804
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Entry
DDB_G0291804 CDS
T00245
Symbol
ddx6
Name
(RefSeq) DEAD/DEAH box helicase
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DDB_G0291804 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddi03019
]
DDB_G0291804 (ddx6)
03036 Chromosome and associated proteins [BR:
ddi03036
]
DDB_G0291804 (ddx6)
Enzymes [BR:
ddi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DDB_G0291804 (ddx6)
Messenger RNA biogenesis [BR:
ddi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
DDB_G0291804 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
DDB_G0291804 (ddx6)
Chromosome and associated proteins [BR:
ddi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
DDB_G0291804 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
8628344
NCBI-ProteinID:
XP_629938
dictyBase:
DDB_G0291804
UniProt:
Q54E49
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All DBs
Position
6:773358..774746
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AA seq
423 aa
AA seq
DB search
MNSQQNKLPQQPQQPPSSIVDDDNWKSQLKLPPRDERRQTEDVTATEGNDFDDLHLKRDL
LRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPALEKTDPTKDVIQV
LILVPTRELALQTSQVCKELGKYMNVQVMASTGGTSLKDDIMRLYNPVHILVATPGRVLD
LAQKNVANLSNCHTMIMDEADKLLSQEFQPLVEQLINFLPQQRQILLFSATFPVTVKSFK
EHYLQQAFEINLMEELTLKGVTQYYAFVEERQKIHCLNTLFSKLQINQSIIFCNSVNRVE
LLAKKITELGYSCFFIHAKMVQAHRNRVFHDFRNGACRNLVSSDLFTRGIDIQDVNVVIN
FDFPKHSETYLHRIGRSGRFGHLGLAINLITYEDRFSLYKIEQELGTEIKPIPPVIDKSL
YAA
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgaatagtcaacaaaataaattaccacaacaaccacaacaaccaccaagttcaattgtt
gacgacgataattggaaatcacaattaaaattaccaccaagagatgaaagaagacaaaca
gaagatgttacagcaacagaaggtaatgattttgatgatttacatttgaagagagattta
cttagaggtatttttgagaaaggatatgtaaagccatcaccaattcaagagaaggcaatt
ccaattgcattagcaggtagagatattatggcacgtgcaaagaatggtacaggtaagaca
gcatcatttttaattccagcattagagaaaacagatccaaccaaggatgtcattcaagta
ttgatattggtaccaaccagagagttggccttacaaaccagtcaagtatgtaaggagttg
ggtaaatatatgaacgttcaagttatggcatccactggtggtacatctctcaaggatgat
attatgcgtttgtataatccagtacatattttagtggccactccaggaagagttcttgat
ttggctcaaaagaatgttgcaaatctctccaattgtcacacaatgatcatggatgaagcc
gataaactattgtcacaagaattccaaccattggtagaacaattgatcaatttcctccca
caacaacgtcaaatcctcttgttttctgccacttttcccgtcactgtaaagagtttcaaa
gaacactaccttcaacaagcctttgaaatcaatcttatggaagagttgaccttgaaaggt
gtcacccaatattacgcctttgtcgaggaacgtcaaaagattcattgtctcaatactctc
ttctcaaagttacaaatcaatcaatccatcatcttttgtaactctgtcaatcgtgtagag
ttattggcaaagaaaatcactgaactcggttacagttgtttctttattcatgctaaaatg
gttcaagctcatcgtaatcgtgttttccatgactttagaaatggcgcttgtcgtaatctc
gtctcctctgatctcttcactcgtggtatcgatattcaagacgttaatgttgtcatcaat
ttcgatttcccaaaacattctgaaacttatctccatcgtattggtcgttcaggtcgtttc
ggtcatctcggtttagccattaatctcatcacctatgaagatcgtttctcactctacaaa
attgaacaagaattaggtactgaaattaaaccaattccaccagttattgataaatcttta
tatgctgcttaa
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