KEGG T00245: DDB

Dictyostelium discoideum (cellular slime mold): DDB_G0302414

Entry

DDB_G0302414      CDS       T00245

Symbol

snrpE

Name

(RefSeq) small nuclear ribonucleoprotein E

K11097

small nuclear ribonucleoprotein E

Organism

ddi Dictyostelium discoideum (cellular slime mold)

Pathway

ddi03040

Spliceosome

Brite

KEGG Orthology (KO) [BR:ddi00001]
09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    DDB_G0302414 (snrpE)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ddi03019]
    DDB_G0302414 (snrpE)
   03041 Spliceosome [BR:ddi03041]
    DDB_G0302414 (snrpE)
   03032 DNA replication proteins [BR:ddi03032]
    DDB_G0302414 (snrpE)
Messenger RNA biogenesis [BR:ddi03019]
Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     DDB_G0302414 (snrpE)
Spliceosome [BR:ddi03041]
Complex A
  U1 snRNP components
   Sm proteins
    DDB_G0302414 (snrpE)
  U2 snRNP components
    DDB_G0302414 (snrpE)
Complex B
  U1 snRNP components
    DDB_G0302414 (snrpE)
  U4/U6.U5 tri-snRNP components
    DDB_G0302414 (snrpE)
Complex C
  U2 snRNP components
    DDB_G0302414 (snrpE)
DNA replication proteins [BR:ddi03032]
Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     DDB_G0302414 (snrpE)

SSDB

Motif

Pfam:

LSM Hfq

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

dictyBase:

UniProt:

LinkDB

Position

5:complement(1315343..1315783)

AA seq 92 aa
MSRHHAKSVMIKPITLIFKFLTQKTEVQIMLFENTDIRIQGVIIGLDEYMNLVLDNASEL
SIKKKTKKPLGQILLKGDNISLVLEAATRPIV

NT seq 279 nt +upstreamnt +downstreamnt
atgagtagacatcatgcaaaatctgttatgattaaaccaatcacattaatttttaaattt
ttaacccaaaaaacagaagtacaaattatgctttttgaaaatacagatattagaattcaa
ggtgtaatcattggtcttgatgaatatatgaatttagttttagataatgcatcagaatta
tcaattaaaaagaaaacaaagaaaccattaggtcaaattttattaaaaggtgataatata
tcactagtattagaggctgcaaccagacctattgtttaa

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