Desulfitobacterium dichloroeliminans: Desdi_0596
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Entry
Desdi_0596 CDS
T02390
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ddl
Desulfitobacterium dichloroeliminans
Pathway
ddl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desdi_0596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddl03019
]
Desdi_0596
03009 Ribosome biogenesis [BR:
ddl03009
]
Desdi_0596
Enzymes [BR:
ddl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Desdi_0596
Messenger RNA biogenesis [BR:
ddl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Desdi_0596
Ribosome biogenesis [BR:
ddl03009
]
Prokaryotic type
rRNA helicases
Desdi_0596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
NAT10_TcmA_helicase
AAA_19
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AGA68127
UniProt:
L0F4M9
LinkDB
All DBs
Position
complement(620574..622076)
Genome browser
AA seq
500 aa
AA seq
DB search
MSTFKELGLSEPLIKSVLNMGFEEATPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGIPL
IQKIAETSEDIQGIVLTPTRELAVQVAEELNKIGQFKGIRTLPIYGGQEIDRQIRALKKR
PHIIVATPGRLMDHMRRRTIRLQNINMVILDEADEMLNMGFVEDIETILQEIPEARQTLL
FSATMPRQIQNLAQKFMKDPELISIKGKEVTVANIEQDYLEVPEKMKFDVLCRLLDIQSP
DLAIVFGRTKSRVDELSEALNKRGYSAEGIHGDLSQSKRDSVMRQFKEGSIEVLVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGLAVTFVTPREIGHLRLIEQLTK
RKITRKNIPTMIEAIEVQQRVAIEKMLRVIAEEDLQNYKHLAENLLEDTDSVTLLSAALK
IMTKEPVQAVTELTGVAPLRVKGNQGRPDQGGYGRRGNYRDGGPGGNYRGRQGKGNSRSN
SAGARGYSGASSRNSDKTNR
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacctttaaagaacttggtttatcagaacctctaattaaatctgtgctcaatatg
ggtttcgaagaagccaccccgattcaagaacaaacaataccccttgccttagaaggcaag
gatgtcatcggacaagctcaaacgggtacgggaaaaacggcggcctttggaatccctttg
attcagaaaatcgccgagacctccgaagatattcaaggaatcgtacttacacctactcga
gaattagcggtacaggtcgctgaagaactcaataaaatcggtcagtttaagggaatccgc
accctgccgatatacggtggacaagagattgaccgccagattagggcgcttaaaaaaaga
ccccatatcatcgtagcgacgccgggtcgcctcatggatcatatgcgcagacgcaccatt
cgcctgcaaaatatcaatatggttattttggatgaggccgacgaaatgctaaacatgggt
ttcgtagaagatattgaaaccatacttcaggaaatcccagaagcacgacaaaccttgctg
ttttcagcgaccatgccaaggcaaatccaaaatctcgcccaaaaatttatgaaagatcca
gagctcatcagcataaagggcaaagaggttacggttgcgaacatcgaacaagattacctt
gaagtaccggaaaagatgaaatttgatgttctttgtcgtttgttagatattcaatctcct
gatttagccattgtttttggacggacaaaaagtagagttgatgagctttccgaagcctta
aacaaacggggctattcagcggaaggcattcatggagatttatcccagagcaaacgggat
agcgtcatgagacagttcaaggagggatccatcgaagtcttagtggcaacggatgttgcg
gcgaggggattggatattagcggagtaactcatgtctataatttcgatattcctcaagat
ccagaaagctatgtgcatcgaattggtcgtacaggcagagcgggaaaaacaggcctagct
gtaacctttgtcaccccacgggagataggtcatctaaggctgattgaacagcttactaaa
cgtaaaataacgcgcaaaaatattcctactatgatcgaagctatcgaggttcaacaacgg
gttgccatagaaaaaatgctacgcgtcatagctgaggaagacctccagaattacaaacac
ctagctgaaaatttattggaagataccgattcagtaaccttattatcggcagccttaaaa
ataatgacaaaggaacctgttcaggctgtaaccgaattgacaggagtcgctcccttacga
gtaaaaggtaatcaaggacgtcccgatcaaggtgggtatggtcgacgcggaaattatcgc
gatggcggacccggtggaaactatcgcggcagacaaggcaaaggaaattctcgtagtaac
tcggcaggtgcacgtggttattccggagccagtagccgtaacagcgataaaacaaataga
tag
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