Desulfitobacterium dichloroeliminans: Desdi_1830
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Entry
Desdi_1830 CDS
T02390
Name
(GenBank) type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
ddl
Desulfitobacterium dichloroeliminans
Brite
KEGG Orthology (KO) [BR:
ddl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ddl03032
]
Desdi_1830
03400 DNA repair and recombination proteins [BR:
ddl03400
]
Desdi_1830
Enzymes [BR:
ddl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
Desdi_1830
DNA replication proteins [BR:
ddl03032
]
Prokaryotic type
DNA Topoisomerases
Desdi_1830
DNA repair and recombination proteins [BR:
ddl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Desdi_1830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
HATPase_c
Toprim
HATPase_c_3
RteC
Motif
Other DBs
NCBI-ProteinID:
AGA69280
UniProt:
L0F8B6
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All DBs
Position
1850595..1852511
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AA seq
638 aa
AA seq
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MSMDSNYNAESIQVLEGLEAVRKRPGMYIGSIGSKGLHHCAWEIIDNAIDEAGAGFCTRI
DVALNLEGSLTVKDNGRGIPIDIHPIKKIPAVRLAFEQLHAGGKFDGNAYKTSGGLHGVG
ASVVNALSTFLVVEVSREGKIFRLEYENGGKLKSDLKVVKKGVKGSGTQVTFKPDSLIFR
ESINFKFDILRSRLMELAFLNPGLMIVLTDNRKEPRSETFQSQNGVIGFVEHLNKESDFN
AVHKKPIHFKGEKEEVVVECAIQYNDGEDEHLRSYVNNIPTDEGGTHESGFRMALTKVFN
AYGKKNNLFKKDENLIGDDLKDGLTCVLSVKVREPQFEGQTKTKLSNMEVEGIVQSLTNE
GISIFFEQNPTVAKDAINRTLTTCLERLAAKRAKELKKKARDAEVKALSGKLAACSEKDR
NRNELYLVEGDSAGGSAKTGRDRRFQAILPLRGKVINTYRAKMDKVLENEEIRSMITAIG
AGVGKEFEADKSNYARVCIMTDADIDGAHIRCLLLTFFFRYMKPLILSGRVYIAQAPLYK
VEKEKGRLVRYAYDENELKEAMKELGKNAKIQRYKGLGEMNPEQLWETTLNPVNRRMIQV
TIDDALEAERKLKILMSEQVDPRREFLMDNIVFTEDDM
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
ttgtccatggattcaaactataatgcagagtcgattcaagttctggaaggtttggaagct
gtacgcaaacgtccaggtatgtatattggttctattggcagcaagggcttacaccattgt
gcttgggagattattgataatgccattgatgaagcaggagcaggtttttgcactcggatt
gatgttgctctcaaccttgagggatccttgaccgtaaaggataatggtcgtggtattcct
attgatatccatcctattaaaaaaattccagccgtgagacttgcttttgaacaactccat
gccgggggaaaatttgacggtaatgcttataagacctcgggaggtcttcatggtgttggt
gctagcgttgtcaatgctttatcaacttttctggtagtggaagtcagtcgtgaaggtaaa
attttccgtcttgaatatgaaaatgggggaaaactgaaatctgatcttaaagtggtgaaa
aaaggtgttaaagggagcggtactcaagtgacctttaagcctgattcacttattttcaga
gagagtatcaattttaaatttgatatacttcgtagcagactgatggaacttgccttttta
aatcccggtctcatgattgtcttgaccgataaccgcaaggaacctcggagtgaaactttc
caatctcaaaatggtgttatcggctttgttgaacaccttaataaagaatccgattttaat
gcagtacataaaaagcccatccattttaaaggagaaaaggaagaagtcgtcgttgaatgt
gctattcagtataacgatggggaagacgagcaccttcgttcctacgtcaataatatcccg
accgacgaagggggaactcacgagtctggatttcgtatggccttgaccaaggtctttaat
gcctatggaaagaaaaacaatctgttcaagaaggatgaaaacctcattggagatgattta
aaggatggcttaacctgcgttctctcagtgaaagtgcgggagccccagtttgaaggacag
acaaaaaccaagctatcgaatatggaagtagaaggaattgtccaatccctgaccaacgaa
ggaatcagcatcttctttgaacaaaaccccacagtagcaaaagatgccattaatcgcact
ctaaccacttgtttagaacgattagctgccaagcgagcaaaagagttgaaaaagaaggct
cgggatgctgaagtgaaggccctcagtgggaagctagcagcttgcagcgaaaaggatcgg
aatcggaatgaactatatttagtggagggagacagtgcgggtggttcggccaagacgggg
agagatcgccgttttcaggctattctccctttaagaggaaaagtcattaatacctatcgt
gctaagatggataaggttctggagaatgaagaaatacgtagtatgattacagctatcggg
gcaggagttgggaaagaattcgaagcagataagtccaattatgctcgggtctgcattatg
actgatgcggatatcgatggagcgcatatacgctgtttattgctcaccttctttttccgc
tatatgaagccactcatcctaagtggaagagtctatattgcccaggctcctttgtataaa
gtagaaaaggaaaagggtaggctagtccgttatgcctatgatgagaatgagctaaaagaa
gccatgaaggaattgggcaaaaatgctaagattcagcgctataaaggactgggagagatg
aaccctgaacaactctgggaaaccaccctcaatcctgtcaatcgacggatgattcaagta
actattgatgatgcccttgaggccgaacgaaagctgaagattctcatgagcgaacaagtg
gatcctcgccgagaatttttaatggataatatcgtatttaccgaagacgatatgtaa
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