Desulfitobacterium dichloroeliminans: Desdi_2014
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Entry
Desdi_2014 CDS
T02390
Name
(GenBank) ATP-dependent DNA helicase, RecQ-like protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ddl
Desulfitobacterium dichloroeliminans
Pathway
ddl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desdi_2014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddl03019
]
Desdi_2014
03400 DNA repair and recombination proteins [BR:
ddl03400
]
Desdi_2014
Enzymes [BR:
ddl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Desdi_2014
Messenger RNA biogenesis [BR:
ddl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Desdi_2014
DNA repair and recombination proteins [BR:
ddl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Desdi_2014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AGA69459
UniProt:
L0F6J6
LinkDB
All DBs
Position
complement(2059315..2061561)
Genome browser
AA seq
748 aa
AA seq
DB search
MMDQALAELKRYFGYAQFRPGQQKVIQSLLEAKDTVAIMPTGAGKSLAYQIPALLFSGVT
LVISPLISLMKDQVDALDDAGVPATFINSSLSINEARTRINKARSGEYKLLYVAPERLET
ESFLVLLESLSISFIAVDEAHCVSQWGHDFRPSYRGIGAFVESLPKRPLIGAFTATATQE
VKEDIVRLLKLRNPNVFVTGFDRPNLSFTTLRGENKKVLLANYCLEHHRESGIIYAATRK
EVDQLQTHLKGKGLSVGKYHAGMNDQDRQKSQEAFLYDKAPLMVATNAFGMGIDKSNVRF
VIHYNMPKNMEAYYQEAGRAGRDGEPAACILLFSPQDVVLQRYMIDNSTFNPERKANEHK
KLQEMSAYCHTTRCLRKEILEYFGETNVPEECGNCGNCTDDRELVDITVDAQKILSCIAR
MRERFGINLVADVLKGSSNKKVHELRFDQLSTYGLMRERKVQEIRDQINYLISEDYLRLS
TGDYPVVKLGKNAVPVLKGDEQVWQKVSRKVKVLEEERLTLFEHLRLLRKEVAGKEGLPP
YMIFADSTLREMANSCPQSRSAFLRLGGVGERKLEKYGDIFLIGIQDYLVKNLNESTLKN
PNESSLKDPSESTQMKQPVEISSNHLHRESLPWESTPSQSKADSGSTEKESKVPSHLVTY
QLYQEGKDLEEICRVRNFKLVTIQEHIVRAFKEGQPIHWSDFVPVGQEELILNAITHVGT
EKLRPIKDTLPEEVDWMAIKMVIAKSEL
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atgatggaccaagctttagcagaactaaaacgatattttggttatgcacaatttcggccg
ggtcaacagaaggttatccaaagcctgctggaagctaaggatacagttgctattatgcct
accggtgccggcaaatccttagcctatcagattcccgcgttgcttttttcaggggtaact
ctggttatttccccgctcatctccttaatgaaggatcaggtggatgctcttgatgatgca
ggagtcccggctacctttatcaatagctctctatccatcaatgaagcgcgaacgaggatt
aataaagctcgtagtggggaatataaactgctttatgttgcaccggagcgattagagaca
gagagctttctggttttgttagaatctttaagcatctcctttatagctgtggatgaagct
cactgcgtctcccagtggggacacgattttcgacccagttatcgaggcattggggctttt
gtggagtcactgcccaagcgaccactcataggagcttttacggcgacggccacccaagaa
gttaaggaagatattgttcgtttattaaagttgaggaaccccaatgtcttcgtgaccggt
tttgatcgtcctaatttgagctttaccaccctccgtggggagaacaaaaaggttttactc
gccaactattgtctcgaacatcatcgggagtcgggaatcatttatgctgctactcgtaaa
gaggtagatcagttgcagactcatttaaagggaaagggactctctgtgggtaagtatcat
gcggggatgaatgatcaagaccgacagaaatcacaagaagcgtttctttatgataaggcg
ccccttatggtggctaccaacgcctttggtatggggattgataaatccaatgtgcgtttt
gttattcattacaacatgcccaagaatatggaggcatactaccaggaagcgggcagagca
ggacgagatggggaacctgctgcgtgtattttattattttcccctcaagatgtagtgctg
caacgttatatgatcgacaactcgacctttaaccctgagcgaaaagccaatgaacacaaa
aagcttcaggagatgtccgcttattgccataccactcgttgcctgcgcaaagaaattctt
gaatattttggtgaaacaaatgtcccagaggaatgtgggaattgtggcaattgcacagat
gatcgggaacttgtcgatattacagtcgatgcccagaaaattctctcctgcatagcccgc
atgcgcgaacgattcgggattaatctggttgccgatgtcctcaaaggttccagcaataag
aaagtccatgaactgcgctttgatcaattaagcacctacggattgatgagagagcgcaag
gttcaagagattagagaccagattaattatctgatttcggaagattatttacggctttct
acaggggattatccggtcgtaaaactaggaaaaaatgctgtaccagttcttaaaggggat
gagcaggtctggcaaaaggtgtcccgcaaagtgaaggtactggaagaagaacggctcacc
ttgtttgagcatttacgtctattgcgcaaggaagtggcaggcaaggaaggtctaccacct
tatatgatttttgcggatagcaccctaagggaaatggcaaattcttgcccgcagagccgc
tccgcctttcttcgccttggtggagtaggggaacgcaagctggaaaaatacggtgatatc
ttcctgatcggtattcaggattatttggtgaagaatctcaatgagtctactctgaagaat
cccaatgaatcttctctgaaggaccccagtgagtctactcagatgaagcaaccggtggaa
atatcttcgaatcatctgcatagggaatcactgccctgggaatcgactccaagccagtct
aaggctgacagcggcagcacagaaaaagaaagtaaagttcccagccatttagttacttac
caattataccaagaggggaaagacctcgaagaaatatgcagagtgcgtaattttaagctg
gtgaccattcaagagcacatagtccgggcgttcaaagaaggtcagccgattcactggagc
gattttgttcctgttgggcaggaagaactgattttgaatgccatcactcatgtgggaacc
gaaaaattgcgccccattaaagacactttgcctgaagaagtcgattggatggctataaag
atggtcatagcaaagagtgaactatag
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