Desulfitobacterium dichloroeliminans: Desdi_2176
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Entry
Desdi_2176 CDS
T02390
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ddl
Desulfitobacterium dichloroeliminans
Pathway
ddl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desdi_2176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddl03019
]
Desdi_2176
03009 Ribosome biogenesis [BR:
ddl03009
]
Desdi_2176
Enzymes [BR:
ddl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Desdi_2176
Messenger RNA biogenesis [BR:
ddl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Desdi_2176
Ribosome biogenesis [BR:
ddl03009
]
Prokaryotic type
rRNA helicases
Desdi_2176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGA69617
UniProt:
L0F8U6
LinkDB
All DBs
Position
complement(2216910..2218505)
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AA seq
531 aa
AA seq
DB search
MSAERLQAFGEINLSKQVLQALSEMGFEEPSPIQKEAIPVAMDGVDLIGQAQTGTGKTAA
FGIPICEKVNPKFQAVQALILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIR
ALRFGSQVVVGTPGRVLDHLNRGTLKLQYVKMVVLDEADEMLDMGFVEDIETILRQVPPE
ERQMMLFSATMPIEIKKLAQNYMHQPKSVAVSRDELTVPLIEQVFYETREKIKVDALCRI
IDMEDIGQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELL
VATDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVSSREYRQLRL
IERLIKTRIVRKELPTLADVSERQAENLKNQLVKIIQRSHLGTYRSIVGSLLEEYDSVDV
AAAALKYAVEGANERSEEEEADIAFGNTGAAPGMVRLFMNIGRLQQVRPQDIVRWIADES
GIPGNIIGMINIYDKFTFVEVPEQHASRVLSCMHQNMIKGRKVNVEPAKAR
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
ttgagtgcagaacgtttacaagcctttggtgaaattaatttaagcaaacaagttttacag
gcattatcagaaatggggttcgaggaaccctcgccaattcagaaggaagctattcctgta
gctatggatggggtggatttgattgggcaggcgcaaaccggcacaggaaaaaccgcagcc
tttggcattcccatttgtgaaaaggtcaatccaaagtttcaggcagtccaagccctgatt
ttgaccccaacccgcgaacttgcggttcaggtatcagaggaaatcagtaagattggtaaa
taccgccatatcaaaccactaccgatttatggaggtcagtccatcgaccgacaaattcgg
gcccttcgctttggcagtcaagtcgtggtcggaacaccaggtcgggtgcttgatcacctt
aatcgaggaactttaaaacttcaatatgtcaagatggtcgtcttggatgaagctgatgaa
atgttggatatgggctttgtggaagatatcgaaaccatccttaggcaagtccctcccgaa
gaacgtcaaatgatgctgttttcagcaaccatgccgatagaaatcaagaagctggctcaa
aactatatgcatcagcctaagtcggttgcggtaagtcgtgatgagcttacagtgcctttg
attgaacaggtgttttatgaaactagagaaaaaatcaaggttgatgctctttgtcggatt
atcgatatggaagatatcggtcaagccatcattttttgccgaaccaagcgcggtgtcgat
gagcttgtagctgccttagaggccagagggtattttgcggatgctttacatggagattta
agccaacaacaaagagatcgcgtgatgaaaaaattccgtgatggaaaagtggaactcctt
gtagctactgacgtagcagccagaggactcgacatcgataatgtgacccatgtcattaac
ttcgatatccctcaagatccggaatcttatgtgcatcgtatcggccgtacaggaagagca
gggagaaagggtcaggcgattacgctggtttcctcaagggaatatcgacaactccgcttg
attgaacgtttaatcaagacgcggattgtgcgtaaagaattaccgaccttagccgatgtc
agtgaacgacaagcagaaaacctcaagaatcaattggttaagattatacaacggagccat
ctcggaacctatcgatctattgtgggttccttgctggaagaatatgattctgtagatgtg
gctgctgcagccttgaaatatgctgtagaaggtgctaatgaacgaagcgaagaggaagaa
gcggatattgcatttggcaatacgggagcagctcctggcatggttcgcctctttatgaac
atcggccgcctccaacaagttcgccctcaggacattgtgcgctggatagccgatgaaagc
ggaattcccggcaatattatcgggatgatcaacatctatgataaatttacttttgtggaa
gtaccggaacagcatgccagccgcgtccttagttgcatgcatcaaaacatgatcaaaggc
cgtaaggtaaacgtcgagccagcaaaagccagataa
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