Desulfitobacterium dichloroeliminans: Desdi_2442
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Entry
Desdi_2442 CDS
T02390
Name
(GenBank) hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ddl
Desulfitobacterium dichloroeliminans
Pathway
ddl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desdi_2442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddl03019
]
Desdi_2442
Messenger RNA biogenesis [BR:
ddl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Desdi_2442
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
RMMBL
Motif
Other DBs
NCBI-ProteinID:
AGA69866
UniProt:
L0FB29
LinkDB
All DBs
Position
complement(join(2485265..2486794,2486794..2486922))
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AA seq
552 aa
AA seq
DB search
MKLSVIPLGGTGEIGKNLLVFEYGDSIIVIDGGVKFPDDELLGIDLVIPDISYLEKRKDK
ILGIFITHGHEDHIGGLPFILPKLQVPVYGTKLTLGLVKAKLRERGGYPEDKFRVINPGE
PIKAGDFEVEAFRVTHSIPDAVGYGILTPIGRVIYTGDFKVDYTPIDGQEMDLGKLAAWG
QEGVLALLCDSTNAERSGSTISEKVVGKTLMDAFSRAEGKIIMATFASNVHRIQQAIEAA
AILKRKICVVGRSMEAVVATARDLGYLHLPDPEILIDTSDVNEIAPSRLLILTTGSQGEP
LAALTRMATGSHRQVNVSAGDTVVISATPVPGNEKLIGRTINHLFQIGADVITKDMGLVH
VSGHANQEEIKLVIRLTRPKFLIPHHGEVRHQVAFSKIGKLMGYHDKKIALTQIGTRVLL
DGQTMELAERVESGSVFVDGLGIGDVGQIVLRDRQQLSQDGVVVVVAALSKGSPTTLVSG
PDIISRGFTFMKEAEELVEGAKKVVAASIETQIGRERWEWGVLRGGIHESLSQYLWDRTR
RRPMILPVLLQF
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgaaattaagtgtgattcccttgggcggaaccggagaaattggcaagaatctattggtc
tttgagtatggtgattccataatcgtcattgatggtggggttaagttccctgatgatgaa
ttgttaggaattgatcttgttataccggacatatcctatctagagaaacgcaaagataaa
attctagggatatttatcacccatggacatgaagatcatattggtggactgccgtttatc
ctgccaaaattgcaggttcctgtctatggcacgaagttgaccctaggattggtcaaagcg
aaactaagagaacggggagggtatcccgaagataaattcagagtcatcaatcccggtgaa
ccgattaaagccggagactttgaagttgaagcctttcgagtcactcatagtataccggat
gccgtgggttatggtatattgactcccatcggcagggtcatttacacgggggactttaaa
gtagactatacccctattgatggtcaagaaatggatctggggaagttagctgcttggggc
caagaaggagtgctggcgttgctctgtgattcaacgaatgcggagcgcagtggctcgacc
atctcggagaaggtcgtcggaaagaccctaatggacgctttctccagagcagaagggaaa
attatcatggctacctttgcatctaacgttcatcgaattcaacaagccattgaagctgca
gctattctaaaacgaaaaatatgtgtggttggtcggagcatggaggcagtggtagccacg
gcgcgggatttaggttatctacacctccctgatccagagatattgattgataccagcgat
gtaaatgagattgctccttccagattactcatcttaacaaccggaagtcagggcgaaccg
ctagcggctctgacccggatggccaccggaagtcatcgtcaggtcaatgtttcggcagga
gatactgtagtgatttcggcaactcctgttccgggaaatgaaaaactcattggcaggacc
atcaatcaccttttccaaattggtgcggatgtgatcacgaaggatatgggtttggttcat
gtttcaggtcatgccaaccaagaagagattaaattagttatccgcttaacgcggcccaaa
ttcttaattcctcatcacggtgaagtgcgtcatcaggtggcatttagtaagatcggcaaa
cttatgggctatcatgacaaaaagattgccttgactcagattggaactcgagtgctacta
gacggacagacgatggaactggcagaacgtgttgaatcgggaagcgtttttgtggatgga
ttgggcatcggcgatgtggggcagatcgtcttgagagatcgacagcagctctctcaagat
ggagttgtcgtcgtggtggcagcactcagcaaaggttcgccgaccaccttggtatcgggg
cctgatattatctcccgtggcttcacttttatgaaagaagcagaagaattagtggagggg
gctaagaaagttgtggcagccagtattgaaacccagattggcagagaacgatgggaatgg
ggagtgctccgagggggtatccatgaatccctaagtcaatacctctgggatagaactcgc
agaagaccaatgattttgccagttcttcttcagttttaa
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