Pseudodesulfovibrio mercurii: DND132_0017
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Entry
DND132_0017 CDS
T01709
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ddn
Pseudodesulfovibrio mercurii
Pathway
ddn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DND132_0017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddn03019
]
DND132_0017
Messenger RNA biogenesis [BR:
ddn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DND132_0017
BRITE hierarchy
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
EGB13235
UniProt:
F0JCQ7
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All DBs
Position
17404..19059
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AA seq
551 aa
AA seq
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MAGTSFTLYPLGGLGEIGMNCMLYRTEKSLVMVDCGLMFPEDYHFGVDVVIPCFDYVLRN
KRQLNGIVLTHGHEDHIGALPWLLQNVDVPVYGSEFTLGLVENKLKEHDLDRWADLRPVR
PYDRLLLGDFRFNFFPVCHSIIEGFGLGIETPAGRVVHTGDFKIDRNPLGGHATDLAAFR
KFSDEGVRLMLSDSTNIGNEGFALTEREIKVSLREIFNTAKGRILVSLFSSHIQRIQEIF
DLADAEGRKVAVSGKSLHRNIELALEQGHLKVPKGTFIELDALDEYGDSQLVLLVTGSQG
EPLAALSRIAMGEHRQLSVRPDDLFILSSRFIPGNVKAINRVINNLYRLGAEVLYEKMHG
IHASGHAHAGELTLMLQTVRPEYFIPVHGEYRHLVKHRRLAIDCGVDEDKAMVVENGQPV
TFFEDGSVEMMPRIAADKILVDGKGVGDVGQSVLKERQLLAGEGMVIVVLVVDEASGEIS
MGPDIMSKGFVFEQQYMHLLDDAKCIVLDVHENIAPGDTAKLKERIRSALRRFFRKVLGR
DPVVVPLVISI
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggccggaacgtccttcaccctctacccgctgggcgggctcggcgagatcggcatgaac
tgcatgctctaccggaccgagaaatccctggtcatggtggactgcgggctcatgttcccg
gaagactaccacttcggcgtggacgtggtcattccctgcttcgactacgtgctgcgcaac
aagcgccagctcaacggcatcgtcctgacccacgggcacgaggaccacatcggcgcgctg
ccctggctcctgcagaacgtggacgtgccggtctacggctcggagttcaccctcggcctg
gtggagaacaagctcaaggagcacgacctggaccgctgggccgacctgcggcccgtgcgt
ccctacgaccgcctcctgctcggcgacttccgcttcaatttcttcccggtctgccactcc
atcatcgaggggttcggcctgggcatcgagaccccggcgggccgggtggtccacaccggc
gacttcaagatcgaccgcaaccccctcggcggccacgccacggacctggccgcgttccgc
aagttttcggacgagggcgtgcgcctcatgctctcggactccaccaacatcggcaacgag
gggttcgccctgaccgagcgcgagatcaaggtctccctgcgcgagatattcaacacggcc
aaggggcgcatcctggtctccctcttttcgagccacatccagcgcatccaggaaattttc
gacctggccgacgccgaagggcgcaaggtggccgtgtccggcaagtccctgcaccgcaac
atcgagctggccctggagcagggccatctcaaggtgcccaagggcacgttcatcgagctg
gacgccctggacgaatacggcgattcccaactggtcctgctggtcaccggaagccagggc
gaacccctggcggccctgtcgcgcatcgccatgggcgagcaccggcagctgtctgtgcgg
cccgacgacctgttcatcctctcctcgcggttcattcccggcaacgtcaaggccatcaac
cgggtcatcaacaacctctaccgcctcggggccgaggtcctgtacgagaagatgcacggc
atccacgcctcgggccacgcccatgcgggcgaactgaccctcatgctccagaccgtgcgg
cccgaatatttcatccccgtgcacggcgagtaccgccacctggtcaagcaccggcggctg
gccatcgactgcggcgtggacgaggacaaggccatggtggtggagaacggccagcccgtg
acctttttcgaggacgggtccgtggagatgatgccgcgcatcgcggcggacaagatcctg
gtggacggcaagggcgtgggcgacgtgggccagagcgtgctcaaggagcgccagctgctg
gcgggcgagggcatggtcatcgtggtcctggtggtggacgaagcctcgggcgaaatctcc
atgggcccggacatcatgagcaaggggttcgtcttcgagcagcagtacatgcacctgctg
gacgacgccaagtgcatcgttctggacgtgcacgagaacatcgcgcccggcgacacggcc
aagctcaaggaacgcatccgctcggccctgcgccgcttcttccgcaaggtgctcggccgc
gacccggtggtcgtgcccctggtcatttccatctag
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