Pseudodesulfovibrio mercurii: DND132_0330
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Entry
DND132_0330 CDS
T01709
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ddn
Pseudodesulfovibrio mercurii
Pathway
ddn03420
Nucleotide excision repair
ddn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ddn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DND132_0330
03430 Mismatch repair
DND132_0330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ddn03400
]
DND132_0330
Enzymes [BR:
ddn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DND132_0330
DNA repair and recombination proteins [BR:
ddn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DND132_0330
MMR (mismatch excision repair)
Other MMR factors
DND132_0330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
DEAD
AAA_12
AAA_11
Hemerythrin
AAA_22
ResIII
Uso1_p115_C
Motif
Other DBs
NCBI-ProteinID:
EGB13547
UniProt:
F0JER2
LinkDB
All DBs
Position
complement(365951..368107)
Genome browser
AA seq
718 aa
AA seq
DB search
MSIDFENELNDAQREAVTTTEGPVLVIAGAGSGKTRTIVYRLANLVQKGVDPAQILLLTF
TRKAAQEMLARAETILGRPLHGTSGGTFHSFAYATLRRNAADIGFAGGFTLMDRADSENV
CKEVRDELKLGKGDRSYPKKATLLDMITKSRNKELTIEAVMEREAYHLSPYLEDIQRIAD
GYAGFKRKHALVDYDDLLFLLDDLLAKNEPLRNQLQARYRYIMVDEYQDTNLVQARIVQQ
LAGPRGNVMAVGDDAQSIYAFRGANVANILKFPKIFEGTKLIRLEKNYRSVQPILDLTNE
ILKGATTKFDKHLYSDLKSDHLPQVIHPLSDQTQARLVVDQILELGRKHMLHDVAVLFRA
SYQSFPLEVALTRIGIDYQKFGGIRFHEAAHVKDVLAFIRLVINPHDLMAWQRAMEHIKG
VGAKTVAKIYQAMHSGDEKYMAKMVKKHEQLRELLAELDRLRAGEKRPSAVLEAVLAFYQ
PILIEKYPDDYPKRQAGLEQLSQIAAGYKDMDQFIGDLSLDGDPDDEQRKENAVVLSTVH
SAKGLEWAAVIIIDLVEDRFPSRKAMQRAEDLEEERRLMYVACTRAKEELRLFVPGSVYN
RASGLSDPTLPSPFVMELPDTVFERLNESYGGGLETRRRPAYSLPDPVPPVYESRDEADA
RDVPEPARPKVDPSKLGFCKHKIFGKGKITAQLDANKYRVNFPGFGLKVIIGDYLEFL
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgagtatcgatttcgagaacgaactgaatgacgcccagcgcgaggccgtgaccaccacc
gagggaccggtgctggtcatcgccggggccgggtcgggcaagacccggaccatcgtctac
cgcctggccaacctggtccagaagggcgtggacccggcccagatcctgctcctgaccttc
acccgcaaggccgcccaggagatgctcgcccgtgccgagaccatcctcggccgccccctg
cacggcacctcgggcggcaccttccactcgttcgcctacgccaccctgaggcgcaacgcg
gcggacatcggcttcgcgggcggattcaccctcatggaccgggccgacagcgaaaacgtc
tgcaaggaggtccgggacgaactcaagctcggcaagggcgaccgctcctatcccaagaag
gccaccctgctggatatgatcaccaagtcccgcaacaaggagctgaccatcgaggcggtc
atggagcgcgaggcctaccacctgagcccctacctcgaggacatccagcgcatcgccgac
ggctacgccgggttcaagcgcaagcacgccctggtggactacgacgacctgctcttcctc
ctggacgacctgctggccaagaacgaacccctgcgcaaccagctgcaggcccgctaccgc
tatatcatggtggacgagtatcaggacaccaacctggtccaggcgcgcatcgtccaacag
ctggccggaccacggggcaacgtcatggccgtgggcgacgacgcccagtccatctacgcc
ttccgcggggccaacgtggccaacatcctgaaatttccaaagatatttgagggcaccaag
ctcatccggctggaaaagaactaccgctcggtccagcccatcctcgacctgaccaacgaa
atcctcaagggcgcgaccaccaagttcgacaagcacctctactcggacctcaagagcgac
cacctgccccaggtcatccatcccctgagcgaccagacccaggcccggctggtggtggac
cagatcctcgaactgggccgcaagcacatgctccacgacgtggccgtgctcttccgcgcg
agctaccagtcctttcccctggaagtggccctgacgcgcatcggcatcgactaccagaag
ttcggcggcatccgcttccacgaggccgcccacgtcaaggacgtgctcgccttcatccgc
ctggtcatcaacccgcacgacctgatggcctggcagcgggccatggagcacatcaagggc
gtgggggccaagaccgtggccaagatctaccaggccatgcactcgggcgacgagaaatac
atggccaagatggtcaagaagcacgaacagctcagggagctgctggccgaactggaccgg
ctgcgcgcgggcgagaagcgcccgtcggccgtgctcgaggccgtgctggccttctaccag
cccatcctcatcgagaaatatccggacgattaccccaagcgccaggccgggctggagcag
ctcagccagatcgcggcgggctacaaggacatggaccagttcatcggcgacctctccctg
gacggcgatccggacgatgagcagcgcaaggagaacgcggtggtcctgtccacggtccac
tcggccaaggggctcgaatgggcggcggtgatcatcatcgacctggtggaggaccgcttc
ccgtcgcgcaaggccatgcagcgggccgaggacctggaggaggagcgccgcctcatgtac
gtggcctgcacccgggccaaggaggaactccggctgttcgtgcccggctcggtctacaac
cgggccagcggcctgtccgaccccaccctgcccagccccttcgtcatggagctgccggac
acggtcttcgagcggctgaacgagtcctacggcggcggcctggagacgcggcggcggccc
gcctactccctgcccgatccggttccgcccgtttacgagtcccgcgacgaagcggatgcg
cgggacgtcccggaaccggcgcggcccaaggtggacccgtccaagctcgggttctgcaag
cacaaaattttcggcaagggcaagatcaccgcccaactggacgcgaacaaatacagggtc
aacttccccggcttcggcctcaaggtcatcatcggggactacctggaattcctctga
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