KEGG   Pseudodesulfovibrio mercurii: DND132_0556
Entry
DND132_0556       CDS       T01709                                 
Name
(GenBank) Type I site-specific deoxyribonuclease
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
ddn  Pseudodesulfovibrio mercurii
Brite
KEGG Orthology (KO) [BR:ddn00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:ddn02048]
    DND132_0556
Enzymes [BR:ddn01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     DND132_0556
Prokaryotic defense system [BR:ddn02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   DND132_0556
SSDB
Motif
Pfam: EcoEI_R_C ResIII SWI2_SNF2 Helicase_C DEAD DUF4145 HSDR_N AAA_25 DUF7289 AAA_19 Mis12
Other DBs
NCBI-ProteinID: EGB13772
UniProt: F0JFU4
LinkDB
Position
complement(604961..608329)
AA seq 1122 aa
MDRTSDTIQSPNFWFLAEHDELLLKCAAQAERLVFADPNAALFKVRLFGELLTKQVAVRS
AVPIYEGDTALRIIRRLDDEGLLTPKINQVLHILRKAGNVAAHELEGEPQHALDALRFAR
ILAIWFHRSFGEDKAFDPGPFLPPAKPQQADDALAEELGRLRRQLAETEQAQQEAQQRAE
EAYQQLSTTEALLRETEQQQTQENARFAERLGELQRQTAEKSQDEINLTKATIKTVAEDA
VDLDEADTRKLIDDQLRDAGWEADTQRITFKAGVRPQKGRNLAIAEWPTATGPADYVLFV
GITPVATVEAKRKRVDVSAAIKQAQRYSKGYVIKGEERLPEGEPWDDHIVPFLLSSNGRP
FLKQVRTKSGIWFRDARVPTNLARPLTAWPTPQGLIELLGQDIPEADETLAKDSSDYLDL
RYYQHEAIRAIEDAIAKGERNILTAMATGTGKTRTCIGLVYRLCKAKRFRRVLFLVDRTS
LGEQTADAFKDFRLESHQTFNDIYDVKELGDIKPDKDTRLQIATIQGMIKRLLFSSEGEQ
PLPVDQYDCVIVDECHRGYNLDKDMSEAELTFRSERDYISKYSRVLDHFDAVRIGLTATP
ALHTTELFGEPVYTYSYRQAVIDGYLVDHEPPIRIVTRLAEDGITWKAGEEIEVLDMKSG
EIDTWNLDDEVSVEIEEFNKRVITEPFNKVVCECLAKHLDPTFDGKTLIFCATDSHADMV
VDLLKQAFADQYGSVDDDAIVKITGTADKPLGLIRHFKNEKMPNVVVTVDLLTTGIDVPK
ITNLVFLRRVRSRILYEQMMGRATRLCDEIGKECFRIFDAVDMYSAIQDYSTMKPVVQNP
SVTFDQLIKELEEAEADDVRKTVIDQFRAKFQRKKRLLEGDALEKFTTITGDDTEQFAQK
LAETDLQATSRMLTSLQGLGAFLDNLRMRKRPKQLISHHDDEVLREERGYGDSVKPKDYL
DAFRQYIDTHKNDVAAIKVVLQRPRDLTRQQLRELKLLLDEQGYSEVKLRTAWRDATNQD
IAASIIGFIRQLALGSPLVPYQKRVERAMERILASRPWTDPQRKWLERIGAQMLEETIVD
RDALNSGQFKADGGFRRLDRVFDGQLEEVLGELNDALWQDAG
NT seq 3369 nt   +upstreamnt  +downstreamnt
atggaccggacaagcgacaccatccaatcaccgaacttctggttcctcgcagagcatgac
gagctgctgctcaagtgtgcagcgcaggccgaacggctggtattcgcggacccgaatgcc
gccctgttcaaggtgcgtctctttggtgaactgctcacgaagcaggtggccgtccgatcc
gccgtccccatctacgagggagacaccgccctccgcatcattcgccgcctcgatgatgaa
ggcctcctgaccccgaagatcaaccaagtcctccacatacttcgcaaagccgggaacgtc
gcagcccacgaactcgaaggagagccgcaacacgcactcgacgcgcttcggtttgcccgc
atcctcgccatctggttccatcgttccttcggtgaggacaaggcattcgatccggggccg
tttctgcctcccgccaaaccacaacaagcagatgacgcccttgccgaggaactgggacga
ctccgcaggcagctcgctgagacggagcaagcgcaacaggaggcacagcagagggcggaa
gaggcctaccaacagctttcaaccaccgaggctcttcttcgagagaccgagcagcaacag
acgcaggagaacgcacggtttgccgaacgactcggagagctgcaaaggcagacagccgaa
aagagccaagacgagatcaacctcaccaaggcgaccatcaagacggtggccgaggatgcg
gtggacctcgacgaggccgacacccgcaaactcatcgacgaccagcttcgtgatgccgga
tgggaagcggacacacagcgcatcactttcaaggccggtgtgcgcccgcagaaagggagg
aatctcgccatcgccgaatggccgacagcaacggggccagccgactacgtcctctttgtg
ggcataactccagtcgcgacggtcgaggccaagcgcaagcgggtcgatgtctccgccgcg
atcaagcaggcccagcggtacagcaagggctatgtgatcaagggggaggagcgacttcct
gaaggcgagccgtgggatgaccatatcgtccccttcctgctttcctccaatggcagaccg
ttcctcaagcaggttcggaccaagagcggcatctggttccgtgacgcccgtgtcccgacc
aaccttgcccgccctctgaccgcgtggccgacaccgcaggggctgattgagctgttgggg
caggacatccccgaggctgacgagacccttgccaaggactcctcggactacctcgatctg
cgctattaccagcatgaagccatccgagccattgaagacgccatcgccaaaggtgagcgc
aacatcctcacagccatggcgacggggacgggcaagacgcgaacctgcatcgggctggtc
taccggctctgcaaggccaagcgattccgccgggtgctcttcctcgtggaccgaacgtcc
ctcggggaacagactgcggacgccttcaaggatttccggttggagagccaccagacattc
aatgacatctacgacgtgaaggagctgggcgacatcaagcctgacaaggacacccggctt
cagatcgctaccatccaaggcatgatcaagcggctcctgttctctagcgagggcgaacag
ccgttgcctgtggaccagtatgactgcgtcatcgtggacgagtgccaccgggggtacaat
ctcgacaaggacatgtcggaagcggaactgaccttccgaagcgagcgggactatatctcc
aagtacagccgggtactcgaccatttcgacgcggtcaggatcggtctcacggcaacgcca
gcactgcacaccaccgaactcttcggcgaaccggtctatacttactcataccgtcaggcg
gtcatcgacggctaccttgtggaccatgagccgcccatccgcatcgtcacgcgtttggcc
gaggacggcatcacatggaaggccggggaagaaatcgaagtgctcgacatgaagagcggg
gagatcgacacatggaatctcgacgatgaggtgtcggtggagatcgaggagttcaataag
cgtgtcatcaccgagccgttcaacaaggtcgtgtgcgagtgtctggccaagcatcttgat
ccgacattcgacggcaagacactcatcttctgcgctacggacagccatgccgacatggtg
gtggacctgctcaagcaggcgttcgccgatcaatatggttccgttgatgacgacgcgatc
gtcaagatcacagggacggcggacaagccgctggggttgatccggcacttcaagaacgag
aagatgccgaatgtggtcgtcactgtggacctgctgaccacgggcatcgacgtgccgaag
atcaccaacctcgtgttcctgcgccgagtccgcagccgcatcctctacgagcagatgatg
ggccgggcgacccggctgtgcgatgagatcggcaaggagtgtttccgcatcttcgatgcc
gtggatatgtactcggccattcaggattactcgaccatgaagccggtggtacagaatccc
tccgtcacgttcgaccagctcatcaaggagctggaagaggcggaggcggatgatgtgcgc
aaaacggtcatcgatcagttccgagccaagttccagcgcaagaaacgtcttcttgagggc
gatgccctggagaagttcacgaccatcacgggagacgataccgaacaattcgctcagaaa
ttggccgagacggatttgcaggccacaagccggatgttgaccagcctccaagggctcggc
gcgttcttggacaatctgagaatgaggaagaggccgaagcaactcatctcccaccatgac
gacgaagtcctccgggaagagcggggctacggcgacagtgtgaagccgaaggactacctc
gacgcattcaggcagtacatcgacacacacaagaacgacgtggcggccatcaaggtcgtg
ttgcaacggccccgtgacctcactcggcagcagctccgggaattgaaactcctgcttgac
gagcaaggctattccgaggtcaaacttcggaccgcttggcgggatgccaccaatcaggat
atcgccgcctccatcatcggcttcatccgccaactcgccttgggttctccgcttgttcct
tatcaaaagagggtcgaacgggccatggaacgcatccttgccagcaggccttggacggac
ccgcagcgcaagtggttagaacgtatcggcgcacagatgttggaagagaccatcgtggac
agggacgcattgaacagcggccagttcaaagcggatggcggttttcgacggttggacagg
gtgttcgacggtcagttggaagaagtgctcggcgaacttaatgacgccttgtggcaggac
gcggggtaa

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