Pseudodesulfovibrio mercurii: DND132_1076
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Entry
DND132_1076 CDS
T01709
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ddn
Pseudodesulfovibrio mercurii
Brite
KEGG Orthology (KO) [BR:
ddn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ddn03016
]
DND132_1076
Enzymes [BR:
ddn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DND132_1076
Transfer RNA biogenesis [BR:
ddn03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DND132_1076
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
EGB14289
UniProt:
F0JBH0
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All DBs
Position
1174977..1177031
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AA seq
684 aa
AA seq
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MAKPISLGPTVRPGTVVEFMHGDQPQLAWVLEESSGKLRLLTINKREMKLPAARLLPWQG
PALSAEVSRQDVQNILNERQEARGEIQAGLDVMELWELAQGEVESAPLSWFADLLWEEWD
EDRLAALGRAMLQAKTHFKFRPPVFEVWPAEKVEQKLRQQAEEKEREAITGAGQTLLAEL
WGAYNQGRKPRLPELAPDLADGLARILKGKVGETLYEEDRKIWTAIAKGLPDVPHLALLL
AQTWGVLPPHHNYHLDEAEYAWGDGWSESFISEIEDLETRFSNQAQTPEIEDAVSIDAST
TRDIDDAFCIARHGTGYRLTIVLARPEAHWTFGSDLDRAVLHRVSSLYLPEGTSHMMPER
LGTGLYSLLEGQARPALVTDFFLDADGVLEKVAPRTAWVRIRANTTYEDAERAIAERTDP
SLLLAHDLATHLLERRLASGACVIRKPEPMVSLTGSGAATEVNIDLKTPSLRSELLVSEF
MILANSGLALWARDNDVPLLHRTQDIALPPESAGIFTEPAEILRSVKLLLPPTLETAPKR
HAALGVPAYAPITSPLRRYTDFINMAQVDSFLASGAPRLDRDELDQLITHLNMRIQAVSA
VQRFRPRYWKLVYLAKRRREFQPAVLVDEAGPMATLAMPHLQVNVRAPKKMLGDKLYPGQ
KFMINFSRIDPLTNEIRLSEALEE
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaccaatctccctcggtcccacggtccgccccggcacggtggtggaattcatg
cacggcgaccagccccagctcgcctgggtgctcgaggagtcgtccggcaagctccgcctg
ctgaccatcaacaagcgcgagatgaagctgcccgccgcccggctgctgccgtggcagggc
ccggcgctgtccgccgaggtctcgcgccaggacgtccagaacatcctgaacgagcgccag
gaggcgcgcggcgagatccaggccgggctggacgtcatggagctgtgggaactggcccag
ggcgaggtggagtccgcgcccctgtcgtggttcgcggacctcctctgggaggagtgggac
gaggaccgcctggccgccctgggacgggccatgctccaggccaagacccacttcaagttc
cgcccgcccgtgttcgaggtctggcccgccgaaaaggtggagcagaagctccggcagcag
gccgaggaaaaggagcgcgaggccatcaccggcgcgggacagaccctgctcgccgagctc
tggggggcctacaaccagggccgcaagccgcgcctgcccgagcttgcgcccgacctggcc
gacgggctcgcccgcatcctcaagggcaaggtcggcgagaccctgtacgaggaggaccgc
aagatctggacggccatcgccaaggggctgcccgacgtgccgcacctggccctgctcctg
gcccagacctggggagtgctgccgccccaccacaactaccacctggacgaggcggagtac
gcctggggcgacgggtggtcggaatccttcatcagtgaaatcgaagatttggagacgcgc
ttttccaatcaagcccagacgcccgagatcgaggacgcggtgtccatcgacgccagcacc
acgcgggacatcgacgacgccttttgcatagcgaggcacggtacgggctaccggctgacc
atcgtcctggcccggcccgaggcccactggaccttcggctcggacctggacagggcggtc
ctgcaccgggtgtccagcctgtacctgcccgagggcaccagccacatgatgcccgagcgg
ctcggcaccggtctgtactccctgctcgaagggcaggcgcgcccggcgctggtcacggac
ttcttcctggacgcggacggcgtgctcgaaaaggtcgcgccgcgcacggcctgggtccgc
atcagggccaacaccacctacgaggacgcggaacgggccatcgcagagcgcaccgacccg
tccctgctgctggcccacgacctggccacccatttgctggagcggcggctggcctcgggg
gcctgcgtcatccgcaaacccgagcccatggtcagcctgaccggcagcggcgcggccacc
gaggtgaacatcgacctgaagacgccgagcctgcgctcggagctcctcgtcagcgaattc
atgatcctggccaactcggggctggccctgtgggcgcgggacaacgacgtgcccctgctc
caccgcacccaggacatcgccctgcccccggagtccgcgggcatcttcaccgagcccgcc
gaaatactgcgctcggtcaagctgctcctgccgcccaccctggagaccgcgcccaagcgg
catgcggccctgggcgtcccggcctacgcgcccatcacctcgccgctgcggcgctacacc
gatttcatcaacatggcccaggtggattcgttcctggcctcgggcgcgccgcgcctggac
cgcgacgagctggaccagctgatcacccacctgaacatgcgcatccaggcggtgagcgcg
gtgcagcggttccgcccccggtactggaagctggtctacctggccaagcgccgccgcgag
ttccagcccgccgtgctggtggacgaggccgggcccatggccaccctggccatgccacac
ctccaggtcaacgtgcgcgcgcccaagaagatgctcggcgacaagctctatccgggccag
aagttcatgataaacttctcgcgcatcgacccgctgaccaacgaaatccgactgagcgag
gccctggaggaatag
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