Pseudodesulfovibrio mercurii: DND132_1592
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Entry
DND132_1592 CDS
T01709
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ddn
Pseudodesulfovibrio mercurii
Pathway
ddn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DND132_1592
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddn03019
]
DND132_1592
03016 Transfer RNA biogenesis [BR:
ddn03016
]
DND132_1592
Enzymes [BR:
ddn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DND132_1592
Messenger RNA biogenesis [BR:
ddn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DND132_1592
Transfer RNA biogenesis [BR:
ddn03016
]
Prokaryotic type
tRNA degradation factors
DND132_1592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_RNR_1st
OB_HELZ2
AbiEi_4
WHD_TBPIP
Rho_RNA_bind
CSD
Motif
Other DBs
NCBI-ProteinID:
EGB14799
UniProt:
F0JEZ8
LinkDB
All DBs
Position
complement(1775352..1777547)
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AA seq
731 aa
AA seq
DB search
MVKKKRSQPRPSTPPLSPAALLKLFKEMKRPMSRAEVIRQLKLKKKDKAEVKDLLRDLVQ
KGKLVRIRRGYGLAESMHCITGRLEIQRQGYGFVVPEDSRRKDIFVNQRDLNDAWHGDRV
VVSVLGEPKAGRNAEGRIVRILERGRKVLPVKVVKRMTGGEWLCRPSDPRLNFGIIATLK
DPSVKVAPGEIALCAPGERIDPTMWEGEITQRLGEETDISVQEAMVKSNHNIRTRFPSGS
ASQAETLPDAPSGKDFQGRRDLTGKPFVTIDGATARDFDDAVLVERRQGGYRLWVAIADV
SHYVPEGSPLDREAFERGNSYYFPRSVEPMFPEKLSNGLCSLNPDVPRLTMVVCMDTDPE
GRTRQTQVFPAVIRSHARLTYTQVFEAIMEKRAEAREKLTPELIAMLELAEELARRINTL
RAKRGSLDFDLPEPEIFFDVHGETSDIRPRQRNFAHQLIEEFMIAANEAVAHFLVERDLP
CLFRIHPAADEEKLKNLFRLLSRTDKSVVMPKEITPKKLQMLVASMAGTDKEYIVNRMLL
RSMKQAKYSPDNEGHFGLASEEYAHFTSPIRRYADLVVHRLVKAALHEGEGVPAPVPGHK
KLLNVADHLSGRERVAMDAEREILKRVTVLFMRDKVGETFDAVISHITDFGFYVELKEVM
AEGMVRLSTMDDDYYTYWPQREMLVGERTGRSFFLGQAVEVVLDEASVERLELNFSLKSV
VAAAMDYKDLI
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggttaagaagaaacgcagtcaacccaggccctccacgccgcccctgtccccggccgcg
ctgctcaagctgttcaaggaaatgaagcggcccatgtccagggccgaggtcatccgccag
ctcaagctcaagaagaaggacaaggccgaggtcaaggacctgctgcgcgacctggtccag
aagggcaagctggtgcgcatccggcgcggctacggcctggccgagtccatgcactgcatc
accgggcggctggagattcagcgccagggctacggcttcgtggtccccgaggactcccgg
cgcaaggacatcttcgtcaaccagcgggacctgaacgacgcctggcacggcgaccgtgtg
gtcgtctcggtgctgggcgaacccaaggccgggcgcaacgccgaggggcgcatcgtgcgc
atcctggagcgcggccgcaaggtccttccggtcaaggtggtcaagaggatgaccggcggc
gagtggctctgccgcccgtccgacccgaggttgaatttcgggatcatcgccaccctcaag
gacccgtccgtcaaggtcgcgcccggcgagatcgccctgtgcgcgcccggcgagcgcatc
gacccgaccatgtgggaaggggagatcacccaacggctgggcgaggagaccgacatctcc
gtgcaggaggcgatggtcaagtccaaccacaacatccgcacccggttcccgtccgggtcc
gcgagccaggccgagaccctgccggacgcgccgtcgggcaaggacttccagggccgccgc
gacctgaccggcaagccgttcgtgaccatcgacggggccacggcccgcgacttcgacgac
gccgtgctggtggagcgccgccagggcggctaccggttgtgggtggccatcgccgacgtc
tcccactacgtgcccgagggctcgcccctggaccgcgaggccttcgaacgcggcaactcc
tactatttcccgaggtccgtggagcccatgtttccggagaagctgtccaacgggctgtgc
tccctcaacccggacgtgccccgcctgaccatggtggtctgcatggacaccgaccccgag
gggcgcacccggcagacccaggtcttcccggcggtcatccgcagccacgcccggctgacc
tacacccaggtcttcgaggcgatcatggagaagcgggccgaggcgcgggagaagctgacc
cccgagctgatcgccatgctggagctggccgaggagctggcccgcaggatcaacaccctg
cgcgccaagcgcgggtcgctggacttcgacctgcccgagccggagatattcttcgacgtg
cacggcgagacctcggacatccggccccggcagcgcaacttcgcccaccagctcatcgag
gagttcatgatcgcggccaacgaggccgtggcccacttcctggtggagcgcgacctgccc
tgcctgttccgcatccatcccgcggctgacgaggagaagctcaagaacctgttccggctg
ctgtctcgtacggacaagtccgtggtcatgcccaaggagatcacccccaagaagctccag
atgctggtggcctccatggcgggcacggacaaggagtacatcgtcaaccgcatgctcctg
cgctccatgaagcaggccaagtactcgccggacaacgagggccacttcggcttggcctcc
gaggagtacgcccacttcacctcgcccatccggcgctacgccgacctggtggtccaccgg
ctggtcaaggccgccctgcatgagggcgagggcgtgcccgcgcccgtgccgggccacaag
aagctgctcaacgtggccgaccatctgtccggccgcgagcgggtggccatggacgccgag
cgcgagatcctcaagcgcgtgaccgtgctgttcatgcgcgacaaggtgggcgagaccttc
gacgcggtcatctcgcacatcaccgacttcggcttctacgtggagctgaaggaggtcatg
gccgaggggatggtccggctgtccaccatggacgacgactactacacctactggccccag
cgcgagatgctcgtgggcgagcgcaccggccggtccttcttcctgggccaggccgtggag
gtggtcctggatgaggccagcgtggagcggctggagctgaacttcagcctcaagtccgtt
gtggctgcggccatggactacaaggacctgatctag
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