Pseudodesulfovibrio mercurii: DND132_1880
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Entry
DND132_1880 CDS
T01709
Name
(GenBank) metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ddn
Pseudodesulfovibrio mercurii
Pathway
ddn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DND132_1880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddn03019
]
DND132_1880
Messenger RNA biogenesis [BR:
ddn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DND132_1880
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
EGB15086
UniProt:
F0JGG9
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All DBs
Position
2095697..2097253
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AA seq
518 aa
AA seq
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MLAEIAMVGGGLILGLGAGIILFKYISDKKVSDSKGLAERIVEEARKESEALKKESRLQA
QDEIFNQKKELEREFKDRESQLKSEEKRLHSKEERLDAKREKVADKEAQVVELEKQLIKQ
EKHLSELEEDLTQKSDEHERKLQEISGLTVEEARENLLKEIESRTRHEAAKMIRNIEMEA
KENASKKAKEILSLALQRYAGDYAGEQTVTAVTLPSEDMKGRIIGREGRNIRALEAATGV
DLIIDDTPETVVLSAFSPLKREVAKQALERLIHDGRIHPARIEEIVRKVEGEMDTKLKEI
GEQATFDVGVHGIHPELINLLGRLHYRTSFSQNVLQHSMEVAFLCGVMAAELGLNEKEAK
RAGLLHDIGKAVDHEIEGPHAIIGADLAKKHGESKEIIHSIAAHHEDTPPMTILANLVQA
ADSLSGARPGARKELLENYVKRLEELEGLATGFDGVQKAYAIQAGREIRVMVDSEKVGDE
NTYVLCKDIAEKIENNMTYPGQIRVTVIREKRAVGYAK
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgttagccgaaatcgccatggtcggcggtggactgatcctcggcctcggagccggaatc
attctcttcaaatacatctccgacaaaaaggtctccgactccaaggggctggccgagcgc
atcgtggaggaggcgcgcaaggaaagcgaggccctgaaaaaggagtcgcgtctccaggcg
caggacgagattttcaaccagaagaaggagctggagcgggagttcaaggaccgcgagagc
cagctcaagagcgaggagaagcgcctccactccaaggaggagcgcctcgacgccaagcgg
gagaaggtcgccgacaaggaggctcaggtggtggagctggaaaagcagctcatcaagcag
gaaaagcacctgagcgaactggaggaggatctgacccagaagtccgacgagcacgagcgc
aagctccaggagatttccggcctgaccgtggaggaggccagggagaacctgctcaaggag
atcgagtcccgcacccgtcacgaagccgccaagatgatccggaacatcgagatggaggcc
aaggaaaacgcctccaagaaggccaaggagatcctctccctggccctgcagcgctacgcg
ggcgactacgcgggcgagcagaccgtgaccgccgtgaccctgccctccgaggacatgaag
ggccgcatcatcggccgtgagggccgcaacatccgcgccctggaagcggccaccggcgtg
gacctgatcatcgacgacacccccgagaccgtggtcctgtccgccttcagcccgctcaag
cgcgaggtggccaagcaggcgctcgaacgcctcatccacgacggccgcatccatcccgcc
cgcatcgaggagatcgtgcgcaaggttgagggcgagatggacaccaaattgaaggagatc
ggcgagcaggccaccttcgacgtgggcgtgcacggcatccaccccgaactgatcaacctg
ctgggccggctgcactaccgcaccagcttctcccagaacgtgctccagcactccatggag
gtcgccttcctgtgcggcgtcatggccgccgagctcggcctgaacgagaaggaggccaag
cgcgcggggctgctgcacgacatcggcaaggccgtggaccacgagatcgaaggcccccac
gccatcatcggcgcggacctggccaagaagcacggcgagtccaaggagatcatccactcc
atcgccgcccaccacgaggacaccccgcccatgaccatcctggccaacctggtccaggcc
gccgactccctgtccggcgcccggcccggcgcgcgcaaggagctgcttgagaactacgtc
aagcgccttgaggagctggaggggctggccaccggcttcgacggcgtgcagaaggcctat
gccatccaggcgggccgcgaaatccgcgtcatggttgattccgagaaggtcggcgacgag
aacacctacgtgctctgcaaggacatcgccgagaagatcgagaacaacatgacctacccc
ggccagatccgggtcacggtcatccgcgagaaacgggccgtgggctacgccaaatag
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