Pseudodesulfovibrio mercurii: DND132_2129
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Entry
DND132_2129 CDS
T01709
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ddn
Pseudodesulfovibrio mercurii
Pathway
ddn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ddn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DND132_2129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ddn03400
]
DND132_2129
Enzymes [BR:
ddn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
DND132_2129
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
DND132_2129
DNA repair and recombination proteins [BR:
ddn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DND132_2129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
DZR
Motif
Other DBs
NCBI-ProteinID:
EGB15334
UniProt:
F0JHU8
LinkDB
All DBs
Position
2363863..2364681
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AA seq
272 aa
AA seq
DB search
MPELPEVEVIARGLDASVTGRTIESVEVPGLTRLSEPEETLVPKVLGRTITHVRRRAKVL
LVELDNGSTLAFHLKMTGRVVHGPKRAAQRHDRILFHLDDGSMLYFADMRKFGYVRCFAA
DELDCWDFLCKAGPEPLETAPEALAERVTGRNCAIKALLLNQSVVAGVGNIYADESLFRA
GINPETRGSRVGRDRAVRLFTALQAVLRQAIAENGSSISDYVNAHGDAGAFQNSFNVYGR
KGEPCRACGETLRAVTVAGRTSTFCPRCQRRR
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactacctgaagtggaagtaattgcgcgcgggctggacgcgtcggtgacgggc
cggaccatcgagtcggtggaggtgcctggcctgacgcgtttgagcgagcccgaggagacc
ctggtgcccaaggtgctggggcggacgatcacgcacgtgcggcggcgggccaaggtgttg
ctggtggagctggacaacgggtccacgctggcctttcatctgaagatgaccgggcgcgtg
gtgcacgggccgaagcgcgcggcgcagcggcacgaccggatcctgtttcatctggacgac
gggtccatgttgtatttcgcggacatgcgcaagttcgggtatgtgcggtgttttgcggcg
gacgagctggattgctgggatttcctgtgcaaggccggccccgagccgttggagaccgcg
cccgaggcgctggccgagcgggtgaccgggcgcaactgcgcgatcaaggcgctgctgctc
aaccagtcggtggtggcgggcgtgggcaacatctatgcggacgagtccctgttccgggcg
ggcatcaaccccgagacccggggcagccgggtgggccgggaccgggcggtcaggctgttc
acggcattgcaggcggtgctgcggcaggccattgccgagaacgggagctccatctcggac
tatgtcaacgcgcacggcgacgccggggcgttccagaacagcttcaacgtgtacggccgc
aagggcgagccgtgccgggcctgcggcgagacgctcagggccgtgaccgtggcgggcagg
acctccaccttctgccccagatgccagcgcaggcgctga
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