Pseudodesulfovibrio mercurii: DND132_2584
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Entry
DND132_2584 CDS
T01709
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ddn
Pseudodesulfovibrio mercurii
Pathway
ddn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DND132_2584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddn03019
]
DND132_2584
03400 DNA repair and recombination proteins [BR:
ddn03400
]
DND132_2584
Enzymes [BR:
ddn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DND132_2584
Messenger RNA biogenesis [BR:
ddn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DND132_2584
DNA repair and recombination proteins [BR:
ddn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DND132_2584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HTH_40
Motif
Other DBs
NCBI-ProteinID:
EGB15787
UniProt:
F0JDB3
LinkDB
All DBs
Position
complement(2875677..2877950)
Genome browser
AA seq
757 aa
AA seq
DB search
MGAGPGRLKPIAFAAPFPYPRPPMTSPRDILSSVFGFPEFIGLQEAIIDHVMGGNDALVL
MPTGGGKSLCYQIPAMLRPGVGVCVSPLIALMQDQVQGLTQMGVRAACLNSAMDPRSAWD
IEQMALNGQLDLLYVAPERLCKPGFLDFIARCGPSLFAIDEAHCVSQWGHDFRPEYTQLS
ILKERFPDVPRLALTATADEPTQADIVRNLQLENARVFATGFDRPNITYTVVPKKNPTRM
LKRFLDEHHPGDAGIVYRLSRKKVEQTADYLCKNGFKALPYHAGLSARERFENQERFMRE
EGVVMVATVAFGMGVDKPNVRFVCHLEPPKSLEAYHQETGRAGRDGLPASAWMCYGMQDI
AILRAMIDSGEANETRKRIEHAKLGSLFAFLETASCRRQALLAYFGEHIGPCGNCDNCLS
PVETFDGTVIAQKALSNIFRTEQRFGVNHLAQVLTGATTDQIVRFNHDRVSTYGIGKDMT
PEEWKSVYRQLLAAGLCSVDLERFNALTLNERSWPVLKGERPVRLRKDPALPKRDKKKQR
RAPVLAQDVLTDREAEALFERLRDLRLSLAETQAVPPYAIFADKTLLEFVRYRPRDMEEF
ACMSGVGASKLERFGETFLESIRGHEEEHGRPDNIPEIPEAVREAKKREAEAKPDFTATA
QATLDLYLELGDVDAVAEARGLKPSSIWRHLVLAVNMGRIDYRRVANLPDGERERIEAAL
RASRSKGVTAMTPVFEALGGAHPYDLIRLVAAGLDRG
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgggggccgggccgggccgcctcaagcccattgccttcgccgcccctttcccctaccct
cgtccccctatgacctccccgcgcgacatcctttcctcggtcttcggctttcccgaattc
atcgggttgcaggaggcgatcatcgaccacgtcatgggcggcaacgacgcgctggtgctc
atgcccacgggcgggggcaagtccctgtgctaccagatcccggccatgctccggcccggc
gtgggcgtctgcgtctcgccgctcatcgccctcatgcaggaccaggtccaggggctgacc
cagatgggcgtgcgcgccgcctgcctcaattcggccatggacccgcgctcggcctgggac
atcgaacagatggccctgaacggccagctcgacctgctctacgtggccccggagcggctg
tgcaagcccggcttcctggacttcatcgcccgctgcggcccctccctgttcgccatcgac
gaggcccactgcgtgtcccagtggggccacgacttccggccggaatacacccagctgtcc
atcctcaaggagcgcttcccggacgtgccgcgcctggccctgaccgccacggcggacgaa
cccacccaggcggacatcgtccgcaacctccagctggagaacgcccgcgtcttcgccacc
ggcttcgaccggccgaacatcacctacaccgtggtgcccaagaagaaccccacgcgcatg
ctgaagaggttcctcgacgagcaccaccccggcgacgcgggcatcgtctaccggctgagc
cgcaagaaggtcgagcagaccgccgactatctctgcaagaacgggttcaaggccctgccc
taccacgccgggctgtcggcccgggagcggttcgagaaccaggaacggttcatgcgcgag
gagggcgtggtcatggtcgccaccgtggccttcggcatgggcgtggacaagcccaacgtg
cgcttcgtctgccacctggagccgcccaagtccctggaggcctaccaccaggagacgggc
cgcgccgggcgcgacggcctgcccgcctcggcctggatgtgctacggcatgcaggacatc
gccatcctgcgggccatgatcgactcgggcgaagccaatgagacccgcaagcgcatcgag
cacgccaagctcggctcgctcttcgccttcctcgaaaccgcctcctgccgccgccaggcg
ctgctggcctatttcggcgagcacatcgggccgtgcggcaactgcgacaactgcctgagc
ccggtggagaccttcgacggcacggtcatcgcccagaaggcgttgtccaacatcttccgc
accgagcagcgcttcggggtcaaccacctggcccaggtcctgaccggggccaccacggac
cagatcgtccgcttcaaccacgaccgcgtgtccacctacggcatcggcaaggacatgacc
ccggaggagtggaagtcggtctaccgccagctcctggccgccgggctgtgctcggtggat
ttggagcgcttcaacgccctgaccctgaacgagcgctcctggcccgtgctcaagggcgag
cgccccgtgcgcctgcgcaaggacccggccctgcccaaacgggacaagaagaagcagcgc
cgcgccccggtcctggcccaggacgtcctgaccgaccgggaggccgaggccctgttcgag
cggctgcgcgacctgcgcctgtccctggccgagacccaggccgtgccgccctacgccatc
ttcgcggacaagaccctgctcgaattcgtgcgctaccggccgcgcgacatggaggagttc
gcctgcatgagcggggtgggcgcgagcaagctggagcgcttcggcgagaccttcctcgaa
agcatcagggggcacgaggaggagcacggccgcccggacaacatcccggagatccccgaa
gcggtgcgcgaggccaagaaacgggaggccgaggccaagccggacttcacggccacggcc
caggccaccctggacctctacctggagctcggcgacgtggacgccgtggccgaggcgcgc
gggctcaagccctcgtccatctggcggcacctcgtcctggccgtaaacatgggcaggata
gactaccgccgcgtggccaacctgccggacggggagcgcgagaggatcgaggcggccctg
cgcgcgtcccgctccaagggcgtcaccgccatgaccccggtcttcgaggccctgggcggg
gcgcacccctacgacctgatccgcctggtggccgccgggctggaccggggctga
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