Pseudodesulfovibrio mercurii: DND132_2739
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Entry
DND132_2739 CDS
T01709
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ddn
Pseudodesulfovibrio mercurii
Brite
KEGG Orthology (KO) [BR:
ddn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ddn03032
]
DND132_2739
03400 DNA repair and recombination proteins [BR:
ddn03400
]
DND132_2739
Enzymes [BR:
ddn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
DND132_2739
DNA replication proteins [BR:
ddn03032
]
Prokaryotic type
DNA Topoisomerases
DND132_2739
DNA repair and recombination proteins [BR:
ddn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DND132_2739
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
EGB15942
UniProt:
F0JJ43
LinkDB
All DBs
Position
3044468..3046879
Genome browser
AA seq
803 aa
AA seq
DB search
MPKDLIIVESPAKVKTISKFLGKDYMVDASVGHVRDLPTRDLGVDEENDFAPHYEIIQGK
EDVVKRLKAAAKKADTVYLAPDPDREGEAIAWHVAELLRPVNDNIRRIQFNEITSRAVKE
ALAHAQDLNENLFDSQQARRILDRLVGYKISPILWKNVKRGISAGRVQSVALKILVEREK
ERRAFKADEYWPFKVLLAGGNPPPFWMDLHKLEGKAVKPGANHISTASEAEALQALLEQG
AFTVDSVQEKQRKRQPLPPYITSTLQQDANRRMGYSAKRTMSIAQRLYEGVELGSRGTTA
LITYMRTDSVRIAKEAQEAAKELILEMFGADYYPSKTRNFKTKGGAQDAHEAIRPVDVAI
TPESVKSFLPAEQYKLYRLIWQRFVGSQMASATFWDTTVLVNAPQTVWRAKGERLLFAGF
LAAMDKAGSEDDVELPKLHEGEVLQLNELKKEQKFTQPPPRYSEASLVKTLEELGIGRPS
TYAAIISTLIDREYARLEEKRFVPTELGFTVSDQLSEHFQALMDVGFTAQMESLLDDVAD
GKKNWGELLRDFGGDFYPTLEKARTEMARSQQVTDINCDQCGKPMAIKFGKTGEFLGCTG
FPTCRNIKNFTRDEEGHIHVVEREKPEDTGVICEKCGRPMAIKQSRRGEFLGCTGYPDCK
SIVNFTRDEEGNIKVVESEKPEVVGVCPDCGGELLLKKARTGSRFIACSNYPDCTYAAPY
STGVPCPREGCTGELVEKSSRRGKIFYSCSEYPKCDYAVWNWPINEHCPKCDHPILVRKT
TRDKGDHIACPKKGCDYTRPVDE
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaagatttgatcatcgtcgagtcccccgccaaggtgaagaccatctccaagttc
ctgggaaaggactacatggtggacgcctctgtgggccacgtgcgcgacctgcccacccgc
gacctgggcgtggacgaggagaacgacttcgccccgcactatgagatcatccagggcaag
gaggacgtggtcaagcgcctcaaggccgcggccaagaaggcggacaccgtctatctcgcg
cccgacccggaccgcgagggagaggccatcgcctggcacgtggccgagctgctccggccg
gtgaacgacaacatccggcgcatccagttcaacgagatcacctcccgggcggtcaaggag
gccctggcccacgcccaggacctgaacgagaacctgttcgactcccagcaggcccggcgc
atcctggaccggctggtgggctacaagatttcgcccatcctgtggaagaacgtgaagcgc
ggtatctcggccgggcgcgtgcagtccgtggcgctcaagatcctggtggagcgcgaaaag
gagcggcgcgccttcaaggcggacgaatactggccgttcaaggtcctcctggcgggcgga
aacccgccgccgttctggatggacctgcacaagctcgaaggcaaggcggtcaagccgggg
gccaaccacatctccaccgcgagcgaggccgaggccttgcaggccctgctcgaacagggc
gcgttcaccgtggactcggtgcaggaaaagcagcgcaagcgccagcccctgccgccgtac
atcacctctaccctgcaacaggacgccaaccggcgcatgggctattcggccaagcggacc
atgtccatcgcccagcgactctacgagggcgtcgagctcggcagccggggcaccaccgcc
ctgatcacctacatgcgtaccgactccgtgcgcatcgccaaggaggcccaggaagcggcc
aaggagctgatcctggagatgttcggggcggactactatccgtccaagacccggaatttc
aagaccaagggcggggcccaggacgcgcatgaagccatccggccggtcgacgtggccatc
acgcccgaaagcgtgaagagcttcctcccggccgagcagtacaagctctaccggctcatc
tggcagcggttcgtaggctcgcagatggcctcggccaccttctgggacaccaccgtgctg
gtcaacgccccgcagaccgtgtggcgcgccaagggcgagcggctgctcttcgccggtttc
ctggcggccatggacaaggccggttccgaggacgacgtggagctgcccaagctgcatgag
ggagaggtcctgcaactcaacgagctgaaaaaggaacagaagttcacccagccgccgccg
cgctactccgaagcgtcgctggtcaagaccctggaggagctgggcatcggccggccgtcc
acctacgcggccattatctccaccctgatcgaccgcgagtacgcccggctcgaggagaag
cggttcgtgcccaccgagctgggcttcaccgtgtccgaccagctgtccgagcacttccag
gccctcatggatgtgggcttcaccgcccagatggagtccctgctcgacgacgtggccgac
ggcaagaagaactggggggaactgctccgtgacttcggcggcgacttctaccccaccctg
gaaaaggcgcgcaccgagatggcccggtcccagcaggtcacggacatcaactgcgaccag
tgcggcaagcccatggccatcaagttcggcaagaccggcgaattcctgggctgcaccggg
ttcccgacctgccggaacatcaagaacttcacccgcgacgaggaaggccacatccacgtg
gtcgagcgcgaaaagcccgaggacaccggggtcatctgcgaaaagtgcggccgccccatg
gccatcaagcagtcccggcgcggcgagttcctgggctgcaccggctacccggactgcaag
tccatcgtcaacttcacccgcgacgaggaaggcaacatcaaggttgtggagtcggaaaag
cccgaggtggtcggcgtctgcccggactgcggcggcgaactgctgctcaagaaggcgcgc
accggctcgcgcttcatcgcctgctccaactacccggactgcacctacgccgccccgtac
tccacgggcgtgccctgcccgcgcgaagggtgcaccggcgaactggtggagaaatcctcg
cgccggggcaagatattctactcctgctccgaataccccaagtgtgactacgcggtctgg
aactggcccatcaacgagcactgccccaagtgcgaccatcccatcctcgtgcgcaagacc
accagggacaagggcgaccacatcgcctgccctaagaagggctgcgattatactcgtcct
gtggacgagtag
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