Pseudodesulfovibrio mercurii: DND132_3182
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Entry
DND132_3182 CDS
T01709
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ddn
Pseudodesulfovibrio mercurii
Pathway
ddn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DND132_3182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddn03019
]
DND132_3182
03009 Ribosome biogenesis [BR:
ddn03009
]
DND132_3182
Enzymes [BR:
ddn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DND132_3182
Messenger RNA biogenesis [BR:
ddn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DND132_3182
Ribosome biogenesis [BR:
ddn03009
]
Prokaryotic type
rRNA helicases
DND132_3182
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DeaD_dimer
AAA_30
Flavi_DEAD
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
EGB16385
UniProt:
F0JKD6
LinkDB
All DBs
Position
complement(3570093..3571748)
Genome browser
AA seq
551 aa
AA seq
DB search
MTSFQELGLSGSTLDALTSKGFTAPTPIQALTIPRLLSGTRDIVGQAQTGTGKTAAFGLP
VIEAAEEGARRVQSLILAPTRELAIQVAEEIDSLKGGKRIRVLPVYGGQAIHMQLKALRQ
GVDVVVGTPGRIMDHLERGSLRIDQLTYFILDEADEMCNMGFVDDVRAILASANADRRTL
MFSATMGGEVMAIAREFMGDFDVVRVKPEVSDAPLTRQVFHEIADSDRFEALCRVIDARP
DFYGLVFVRTRADADLVAARLTQRGYPAEPIHGDLNQAQREKILSGFRERKATILVATDV
AARGIDVPDLTHVVNFALPQDPQTFVHRTGRTGRAGKQGVAITLITPNEFRKLMYIAKST
GIDIAKEPLPRIEDVIHSKKRKVVDELNAILEAEGHGAYLAMAGELLHDRPAEEVVAALL
RSAFGEELVESGYRRIEPVGPAGRGRADMTCALGRAHGMNPKRFVDFIASAANVKQWAIQ
HVRVQNDRTTFTVPAAEADRVMERVNSREGETLVTRDESRRKPPGRKFPQKGWKPAGKAP
RTQRRKPQPGR
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgaccagtttccaggaactggggctttccggatccaccctggacgccctgacgtccaag
gggttcaccgcccccacccccatccaggccctgaccattccccgactgctctccggcacc
cgcgacatcgtgggccaggcacagaccggcacgggcaagaccgcggccttcggcctgccg
gtcatcgaagcggccgaggagggggcgcgccgcgtccagtcgctcatcctggcccccacc
cgcgagctggccatccaggtggccgaggagatcgactccctcaagggcggcaaacgcatc
cgcgtgctcccggtctacggcggccaggccatccacatgcagctcaaggccctgcgccag
ggcgtggacgtggtcgtgggcacccccggccggatcatggaccacctggagcgcggctcc
ctgcgcatcgaccagttgacctacttcatcctcgatgaggcggacgagatgtgcaacatg
ggcttcgtggacgacgtccgcgccatcctggcctcggccaacgcggaccggcggaccctc
atgttctcggccaccatgggcggcgaggtcatggccatcgccagggaattcatgggcgac
ttcgacgtggtccgggtcaagcccgaggtctcggacgcgcccctgactcgccaggtcttc
cacgagatcgccgactccgaccgcttcgaggccctgtgccgggtcatcgacgcccggccg
gacttctacggcctggtcttcgtgcgcacccgcgccgacgccgacctggtggccgcccgc
ctgacccagcgcggctacccggccgagcccatccacggcgacctgaaccaggcccagcgc
gagaagatcctgagcggcttccgcgagcgcaaggcgaccatcctggtggccacggacgtg
gccgcgcgcggcatcgacgtgccggacctgacccacgtggtcaacttcgccctgccccag
gacccgcagaccttcgtgcaccgcaccggacgcacgggccgcgcgggcaagcagggcgtg
gccatcaccctgatcacgccgaacgaattccgcaagctcatgtacatcgccaagagcacc
ggcatcgacatcgccaaggagcccctgccgcgcatcgaggacgtcatccactccaagaag
cgcaaggtggtggatgaactgaacgccatcctggaggcggaaggccacggcgcctatctg
gccatggccggggaactgctccacgacaggcccgccgaggaggtggtcgccgccctgctg
cgcagcgccttcggcgaagagctggtcgagtccggctaccgccgcatcgagcccgtggga
ccggccggacggggccgggccgacatgacctgcgccctgggccgcgcccacggcatgaac
cccaagcggttcgtggacttcatcgcctcggccgcgaacgtcaagcagtgggccatccag
cacgtccgggtgcagaacgaccggaccaccttcacggtcccggccgccgaggccgaccgg
gtcatggagcgggtcaacagccgcgagggagaaaccctggtcaccagggacgagtcgcgg
cgcaagccccccggccgcaagttcccccaaaaagggtggaagcccgcgggcaaggccccg
cgcacccagcgccgcaaaccccagccgggccgctag
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