Pseudodesulfovibrio mercurii: DND132_3395
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Entry
DND132_3395 CDS
T01709
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ddn
Pseudodesulfovibrio mercurii
Pathway
ddn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ddn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DND132_3395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ddn03021
]
DND132_3395
03400 DNA repair and recombination proteins [BR:
ddn03400
]
DND132_3395
Enzymes [BR:
ddn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DND132_3395
Transcription machinery [BR:
ddn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DND132_3395
DNA repair and recombination proteins [BR:
ddn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DND132_3395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
EGB16598
UniProt:
F0JKZ9
LinkDB
All DBs
Position
3791076..3795230
Genome browser
AA seq
1384 aa
AA seq
DB search
MTLDDLFTLRGAPNAAAQGRNLKAIQISIAAPETIREWSYGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIW
FLKTLPSKIGTLLDITMADLEKVLYFDSFIVLDPGETPLKKHQVVSEDQYFQVIDHFGED
ALTVGMGAETVRTMLQALDLPTLRTELREESQTTRSQTKKKKITKRLKIVESFLESGNKP
EWMIMEVIPIIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPEIIIRN
EKRMLQEAVDALFDNGRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSV
IVVGPKLKLHQCGLPKKMALELFKPFIYSELEKREIATTIKSAKKMVEREDLVVWDILED
VVREYPIMLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSV
EAQIECRVLMMSSNNILSPSNGSPIINPSQDIVLGLYYLTTPRSFEKGEGMTFSSPEEVI
SAHDFGAVGIHARIKVRMNGEIVETTTGRVIVSEILPDKVPFELVNCVLNKKNIAALVSG
AYRLAGTKATVILCDRIKDLGYEYATRAGVTIGVKDLKIPDNKPKMLATANAEVDEIENQ
FQDGIITRTEKYNKIVDVWTKVTNDISNETMKEMSTDILVDPKTGNTEVNSSFNPIYMMA
TSGARGNQDQMRQLAGMRGLMAKPSGEIIETPITASFREGLSVLQYFISTHGARKGLADT
ALKTANSGYLTRRLVDVVQDVTVSELDCGTVDGLELTHYIKGGEIKQRLAERVLGRVTMF
DTYDEETGELVVPANTMIDDEYAKKLDASGVNSIVIRSGLTCKSKHGVCAMCYGRDLARG
HLVNVGETVGIIAAQSIGEPGTQLTMRTFHIGGTASKEIESSSIESQHNGRVVTSRMRTV
VNADGDKMVLGKSCQVGIVDEQGREREKYVLPSGARLLVDEGQEVKKGTALAEWDPYMEP
FIVDVSGTIKFKDIIEGKTVQEDRTSKASFTIMEYRTTNYRPAVTLLGEDGKPVHRPGTD
IDANFAMPVGAILMVKDGDTVRAGDVIARKPRESSKTKDIVGGLPRVAELFEVRKPKDLG
VVSSIDGVVTFGPETKGKRKVVVTPETGDAKEFLIPKGKHITVQESDFVEAGDLLTEGSP
ELHDILRIKGEKYLARYLVEEIQDVYRFQGVNINDKHIEIIVRQMLKKVSILNPGSTSFL
IGEQVDKLRFMEENQKVVAEGGKPAVAETLVLGITQASLSTDSFISAASFQETTKVLTEA
SLKGKTDHLHGLKENVIVGRLVPAGTGFRKYTDAEISVPDQPERPDKFLEELEESPLLVD
VSMV
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgacgttggacgatctgttcaccttacgtggagcgccgaacgcggctgcacaaggccgc
aacctgaaggctatccagatatccatagctgcgcccgaaaccatccgggagtggtcctac
ggtgaagtcaaaaaaccggagaccatcaactaccggaccttcaaaccggagcgggacggc
ctgttctgcgccaagatcttcggcccggtgaaggactacgagtgcaactgcggcaaatac
aagcgcatgaagcatcgcggcatcgtctgcgagaagtgcggcgtcgaggtcatcgcctcc
aaggtccgccgcgagcgcatgggacatatcgagctggccgcccccgtggcgcacatctgg
ttcctgaagaccctgccgtccaagatcggcacgctgctcgacatcaccatggccgacctg
gaaaaggtcctgtactttgactcgttcatcgtgcttgatccgggcgagaccccgctcaag
aagcaccaggtggtcagcgaggaccagtacttccaggtcatcgaccacttcggcgaggac
gctctgaccgtgggcatgggcgccgagaccgtgcggaccatgctccaggccctggacctg
ccgaccctgcgcaccgagctgcgcgaggagtcgcagaccacccggtcccagaccaagaag
aagaagatcaccaagcggctgaagatcgtcgagtccttcctggagtccggcaacaagccc
gagtggatgatcatggaagtgattccgatcatcccgcccgagctgcgcccgctggtcccc
ctggacggcggccgtttcgccacttcggacctcaacgacctgtaccgtcgcgtcatcaac
cgcaacaaccgcctgaaacggctgcttgaactcggcgcgcccgagatcatcatccgcaac
gagaagcgcatgttgcaggaggccgtcgacgccctgttcgacaacggtcgtcgcggccgg
gccatcaccggcaccaacggccgtccgctcaagtccctgtccgacatgatcaagggcaag
cagggccggttccgccagaacctgctcggcaagcgcgtggactactccggccgttcggtc
atcgtggtcggtcccaagctcaagctgcaccagtgcggcctgcccaagaagatggcgctc
gagctgttcaagccgttcatctactcggagctggagaagcgcgagatcgccacgaccatc
aagtcggccaagaagatggtcgagcgcgaggacctggtcgtctgggatatcctggaggat
gtggtccgcgagtacccgatcatgctcaaccgcgccccgaccctgcaccgtctgggcatc
caggccttcgagccgaccctggtcgagggcaaggccatccagttgcacccgctcgtctgt
tccgcctacaacgcggacttcgacggcgaccagatggccgtgcacgtgccgctgtccgtt
gaggcgcagatcgagtgccgcgtgctgatgatgtcctccaacaacatcctcagcccgtcc
aacggctcgccgatcatcaacccgtcccaggatatcgtcctcgggctgtactacctgacc
acaccgcgctccttcgagaagggcgagggcatgaccttctcctccccggaagaggtcatc
tcggcccacgacttcggcgcggtgggcatccacgcgcgcatcaaggtgcgcatgaacggc
gagatcgtcgagaccaccacgggccgcgtcatcgtcagcgagattctgcccgacaaggtt
ccgttcgagctggtcaactgcgtgctgaacaagaagaacatcgccgccctggtctccggc
gcctaccgtctggcgggcaccaaggccacggtcatcctgtgcgaccgcatcaaggacctg
ggctacgagtacgccacccgcgccggtgtgaccatcggcgtcaaggacctgaagatcccg
gacaacaagcccaagatgctcgcgacggccaacgccgaagtggacgagatcgaaaaccag
ttccaggacggcatcatcacccggaccgagaaatacaacaagatcgtcgacgtctggacc
aaggtcaccaacgacatctccaacgagacgatgaaggagatgtccacggacatcctggtc
gaccccaagaccggcaacaccgaggtcaactcgagcttcaaccccatctacatgatggcc
acctccggcgctcgaggcaaccaggaccagatgcggcagctggccggcatgcgcggtctg
atggccaagccttcgggcgagatcatcgagaccccgatcaccgcgagcttccgcgaaggt
ctgtccgtcctccagtacttcatctccacccacggcgcacgcaagggcctggccgacacc
gcgctcaagaccgcgaactccggctacctgacccgccgcctggtggacgttgtccaggac
gtgaccgtgtccgagctggactgcggcaccgtggacggactggagctgacccactacatc
aagggcggcgagatcaagcagcgcctggccgaacgcgtgctgggccgcgtgaccatgttc
gacacctatgacgaggagaccggcgagctggtcgtccccgccaacaccatgatcgacgac
gagtacgccaagaagctcgacgcctcgggcgtgaactccatcgtcatccgctccggcctg
acctgcaagtccaagcacggcgtctgcgccatgtgctacggtcgcgatctggcccggggc
catctggtcaacgtgggcgagaccgtcggcatcatcgccgcgcagtccatcggcgagccc
ggcacccagctgaccatgcgtaccttccatatcggcggtaccgcctccaaggagatcgag
tcctcaagcatcgagtcgcagcacaatggccgcgtggtcacctcgcgcatgcgcaccgtc
gtcaacgccgacggcgacaagatggtcctgggcaagagctgccaggtgggcatcgtggac
gagcagggccgcgagcgcgagaagtacgtgctcccgtccggcgcgcgtctgctggtggac
gaagggcaggaggtcaagaagggcaccgccctggccgaatgggatccgtacatggaaccg
ttcatcgtcgacgtgtccggcaccatcaagttcaaggacatcatcgaaggcaagaccgtc
caggaggaccgcacctccaaggcgtccttcaccatcatggaataccggacgaccaactac
cgtccggccgtgaccctgctgggcgaggacggcaagcccgtgcatcggcccggcaccgac
atcgacgccaacttcgccatgccggtgggcgccatcctcatggtcaaggacggcgacacg
gtccgcgccggcgacgtcatcgcccgcaagccgcgcgaatcctccaagaccaaggacatc
gtcggcggtctgccgcgcgtcgccgagctcttcgaggtgcgcaagcccaaggacctgggc
gttgtctcgtccatcgacggcgtggtcaccttcggtcccgagaccaagggcaagcgcaag
gtcgtggtcactccggaaaccggcgacgccaaggaattcctcattcccaagggcaagcac
atcacggttcaggagtccgacttcgtcgaggccggcgacctgctgaccgaaggctccccg
gagctgcacgacatcctgcggatcaagggcgaaaagtacctggcccgctacctggtcgag
gaaatccaggacgtgtaccggttccagggcgtcaacatcaacgacaagcacatcgagatc
atcgtccggcagatgctcaagaaggtctcgatcctgaaccccggctccacctccttcctc
atcggcgagcaggtggacaagctccggttcatggaagagaaccagaaggtcgtggccgag
ggcggcaagcccgccgtggccgagaccctggtgctcggcatcacccaggcctcgctgtcc
acggactcgttcatctcggcagcctcgttccaggagaccaccaaggtcctgaccgaggcc
tccctgaagggcaagaccgaccatctgcacggcctgaaggaaaacgtcatcgtgggccgc
ttggtgcccgccggtaccggcttccgcaagtacacggacgccgagatcagcgtgcccgac
cagcccgaacgccccgacaagttcctcgaggagctggaagaaagcccgctcttggtggac
gtgtcgatggtgtag
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integrated database retrieval system
