Dokdonia donghaensis: I597_1676
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Entry
I597_1676 CDS
T04309
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ddo
Dokdonia donghaensis
Pathway
ddo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I597_1676 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddo03019
]
I597_1676 (rhlE_2)
Enzymes [BR:
ddo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I597_1676 (rhlE_2)
Messenger RNA biogenesis [BR:
ddo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I597_1676 (rhlE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Fe-ADH
P-loop_SecA
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ANH60580
UniProt:
A0A0A2GX72
LinkDB
All DBs
Position
1876319..1877596
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AA seq
425 aa
AA seq
DB search
MSFKSLGLSDALLKAVSEKGYTTPSPIQQKAIPKVLEGKDVLASAQTGTGKTAGFTLPML
HNLIANPRQGRRKVRALVLTPTRELAAQIYDNVREYSKYVDIKSTVIFGGVNQNPQVRTI
RQGVDILVATPGRLLDLENQGLLSLSDIEFLVLDEADRMLDMGFIHDIKKVLRLVPAKRQ
NLLFSATFNKDIKKLASSILTNPVLVEATPENTTAEKVDQKTYRVDKSRKTEMLIKFINE
GNWDQVLVFTRTKHGANRLSQKLDKAGITSAAIHGNKTQNARVKALAGFKSGKIRVLVAT
DIAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVAYVRGIEK
LLGEKLHSEVLEGFQPTDTLEQLKKEAAENKARHQQGRRNSRNSKPSGEKRNDKSNSRSG
RSRRR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaaatctttggggctatctgacgccctgctcaaagctgtgagcgaaaaaggc
tatacaacgccatcacctattcaacaaaaagcaattccaaaagtactagaaggtaaagat
gttcttgccagtgctcaaacaggtaccggtaaaaccgcaggctttacattacctatgtta
cacaatcttatcgcaaacccgcgacaaggaagacgcaaagtaagagcgcttgtacttaca
ccaactagagagctagctgctcagatctatgataatgtgcgcgagtatagtaagtatgta
gatattaaatctacagtaatttttggcggagtaaaccaaaatcctcaagtacgtaccata
cgtcaaggagtagatatacttgtagcaacacctgggagactacttgaccttgagaatcaa
ggcctacttagtctttctgatattgagtttttagtgcttgatgaagcagaccgtatgctt
gatatggggttcatacacgatattaaaaaagtattacgattagtacctgcaaagagacaa
aacctgctttttagcgctacttttaataaagatattaagaaacttgcaagtagtatactt
acaaatccggtactagtagaagcaacaccagaaaatacaaccgccgaaaaagtagaccag
aaaacttacagagtagataagtctcgtaagaccgaaatgcttataaaatttattaatgaa
ggtaactgggatcaggtactggtatttacaagaacaaagcacggtgcaaaccgtcttagt
caaaaacttgataaagcaggaataacatctgcagctatacacggtaataaaacacaaaat
gcgagagtaaaagcactcgcaggttttaaaagtggtaaaataagagtgcttgtagcaaca
gatattgctgcacgtggtcttgatatccctttattaccttatgttataaactacgagctt
cctaatgtgccagaagattatgtacatagaataggtcgtacaggtagagcaggagctagc
ggccaggctatatctttagtaggggtagatgaggttgcttatgtacgtggtattgaaaaa
ctattaggagaaaaacttcatagcgaggtgctagaaggttttcaacctacagatacatta
gagcaacttaaaaaggaggcagccgaaaataaagcgcgtcaccagcaaggacgtcgtaat
agtcgtaatagtaaaccatctggtgaaaaaaggaatgataaatctaacagtcgttctggt
agatctagaagaagataa
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