Delphinus delphis (saddleback dolphin): 132417239
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Entry
132417239 CDS
T11117
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ddp Delphinus delphis (saddleback dolphin)
Pathway
ddp03030
DNA replication
ddp03410
Base excision repair
ddp03420
Nucleotide excision repair
ddp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ddp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
132417239 (LIG1)
03410 Base excision repair
132417239 (LIG1)
03420 Nucleotide excision repair
132417239 (LIG1)
03430 Mismatch repair
132417239 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ddp03032
]
132417239 (LIG1)
03400 DNA repair and recombination proteins [BR:
ddp03400
]
132417239 (LIG1)
Enzymes [BR:
ddp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
132417239 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
132417239 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
132417239 (LIG1)
DNA replication proteins [BR:
ddp03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
132417239 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
132417239 (LIG1)
DNA repair and recombination proteins [BR:
ddp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
132417239 (LIG1)
NER (nucleotide excision repair)
Other NER factors
132417239 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
132417239 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
132417239
NCBI-ProteinID:
XP_059856894
LinkDB
All DBs
Position
20:8245391..8287176
Genome browser
AA seq
922 aa
AA seq
DB search
MQRSIMSFFQPKKEGKVKKPEKEISNSTRETESPPKVALKERNRVVPEGDSPVKRPGRKM
ARVLGSEGEDEEEEAPKPPKIQKHAPDSPQVSPPSPGTPPESSPSHSSTSPTVVSPSGIP
KRRTARKQLSKRTFQDVLQEQGKDEDGGTKKKRKKEEEEEEELETPTESLTEPEGGNKKE
AEEGDQPRSPPEPLKTSTKPPTESVSEPKVAVKQGPQEDGQAKPPPKAPKTLSSFFSPRK
PAIKQEAKEEGPSALGKDETKGHLDPSSYNPAKNNYHPVEDACWKVGQRVPYLAVARTFE
KIEEVSARLRMVETLSNLLRSVAALSPADLLPILYLSLNRLGPPQQGLELGIGDGILLKA
VAQATGRQLESVRAEAAEKGDVGLVAESSRSTQRLMLPPPALTASGVFTKFRDIAQLAGS
ASTAKKMDVIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFP
PAVVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLEHGVERLPEHCRLSPG
VPLKPMLAHPTRGVSEVLRRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGR
YPDIISRIHKIKLPSVTSFILDAEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCL
YAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTDQIAEFLEQSVKD
SCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGG
FLLAAYDEESEELQAICKLGTGFSDEELEEHHQTLQALVLPAPRSYVRADGAVAPDHWLD
PSAVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFICVREDKKPEEATTSAQVACLY
RKQSQIQNQQGAEPDSDLEDFY
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtattatgtcatttttccagcccaagaaagagggcaaagtgaagaagcca
gagaaggagatatccaacagcaccagagaaacagagtcccctccaaaggtggcgctgaag
gagcggaatagagtggtacctgagggcgactctccagtgaagaggccagggaggaagatg
gcccgggtcctgggcagcgaaggggaggacgaggaggaggaagcccccaagccccccaaa
atccagaagcatgctccagattccccacaagtctcccctcccagtcctggcacaccgcct
gagagcagcccttcccactctagcacctctcccacggtcgtctccccgtcagggatcccg
aagcgtcgcacggcccggaagcagctttccaaacggacatttcaggatgtcctgcaagag
cagggcaaggacgaggacggaggaaccaagaagaagaggaagaaggaggaggaggaggaa
gaagaattagagacaccgacagaaagcctcacagagcctgaagggggcaacaagaaggaa
gcagaagaaggggaccagcccaggtcaccccctgagcccctgaagacctccacaaagccc
ccaacagaaagcgtttcagagcccaaggtggccgtgaagcagggaccacaggaggacggc
caggctaagcctccccccaaagctcccaagacgctcagcagtttcttctctccccggaag
ccagcgatcaaacaagaagcaaaagaagagggacccagcgctctaggaaaggacgagacc
aagggacacctggacccatccagctacaatcctgccaagaacaactaccatcccgtcgaa
gatgcttgctggaaggtgggccagagagtcccttacctggctgtggcccggacgtttgag
aagatcgaagaggtttctgcacggctccggatggtggagacactgagcaacctcctgcgc
tccgtggcggccctgtcacctgctgacctcctccccatcctctacctcagcctcaaccgc
ctggggccgccccagcagggcctggagctcggcattggtgacggcatcctcctcaaggcg
gtggcccaggccacaggccggcagctcgagtcggtccgggccgaggcggccgagaagggc
gacgtggggctggtggccgagagcagccgcagcacccagaggctcatgctgcccccaccc
gccctcaccgcctccggcgtcttcaccaagttccgggacatcgcgcagctggccggcagc
gcttccacagccaagaagatggacgtcatcaaaggcctctttgtggcctgccgccactca
gaagcacgattcatcgccagagccctgagtggacggctgcgcctcgggctggcagagcag
tcagtgctggcggccctcgcccaggccgtgagcctcaccccgccaggtcaagaattcccc
ccagccgtggtggatgctgggaagggcaagacagcagaggccagaaagacatggctggag
gagcaaggcatgatcctgaagcagacgttctgcgaggtgcccgacctggaccggatcgtc
cccgtgttgctggagcacggtgtggagcggctcccggagcactgcaggctgagcccaggg
gtccccctgaaaccaatgttggcccacccaacgcggggcgtcagcgaggtcctgaggcgc
tttgaggaggcagctttcacctgcgagtacaaatacgatgggcagagggcacagatccac
gttttggaaggcggcgaggtgaagatcttcagcaggaatcaggaggacaacaccggaagg
taccctgatatcatcagccgcatccacaagattaaactcccatcagtcacatccttcatc
ctggacgcggaagctgtggcttgggaccgggaaaagaagcagatccagccattccaagtg
ctcaccacccgcaaacgcaaggaggtggacgcggcagagatccaggtgcaggtgtgtctg
tacgccttcgacctcatctacctcaatggagagtccctggtacgtgagcccctttcccga
cgccggcagctgctccgggagaacttcgtggagacggagggcgagtttgtctttgccacc
tctctggacaccaaggacacggaccagatcgccgagttcttggagcagtcggtgaaagac
tcctgcgaggggctgatggtgaagaccctggatgtggacgccacctacgagatcgccaag
aggtcgcacaactggctcaagctgaagaaggactacctggatggcgtgggcgacaccctg
gacctcgtggtgatcggcgcctacctgggccggggaaagcgggccggccggtacgggggc
ttcctgctggccgcctacgacgaggagagcgaggaactgcaggccatatgcaagctcgga
acgggcttcagcgacgaggagctagaggagcatcaccagaccctccaggccctggtgctg
cccgccccacgctcctatgtccgggccgacggcgctgtggcccctgaccactggctggac
cccagtgccgtgtgggaggtgaagtgcgcagacctctccctctcccccatctacccggct
gcccggggcctggtggatagcgagaagggaatctccctccgcttccctcggtttatctgc
gtccgtgaggacaagaagccggaggaggccaccaccagtgcccaggtggcctgtctgtac
cggaagcaaagtcagattcagaaccagcaaggcgcagagccagactccgacctggaagat
ttctactag
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