Delphinus delphis (saddleback dolphin): 132430558
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Entry
132430558 CDS
T11117
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
ddp Delphinus delphis (saddleback dolphin)
Pathway
ddp03015
mRNA surveillance pathway
ddp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132430558 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
132430558 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddp03019
]
132430558 (PABPC4)
03041 Spliceosome [BR:
ddp03041
]
132430558 (PABPC4)
Messenger RNA biogenesis [BR:
ddp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
132430558 (PABPC4)
mRNA cycle factors
Stress granule specific factors
132430558 (PABPC4)
Spliceosome [BR:
ddp03041
]
Complex C
Other components
Complex C specific factors
132430558 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
RRM_3
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
132430558
NCBI-ProteinID:
XP_059875793
LinkDB
All DBs
Position
1:complement(31689698..31704992)
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AA seq
660 aa
AA seq
DB search
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEK
HEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTT
AQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQSLAPRAAVAAAAPRAVAPYK
YASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHS
NLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgcggccagcagctaccccatggcctccctgtacgtgggtgacctgcactcg
gacgtcaccgaggccatgctgtatgaaaagttcagtcctgcggggcctgtgctgtccatc
cgggtctgccgcgacatgatcacccgccgctccctgggttatgcctatgtcaacttccag
cagccggctgacgctgagcgggccttggataccatgaactttgatgtgattaagggaaag
ccaatccgtatcatgtggtctcagagggatccctctttgcgaaaatctggcgtgggaaat
gtcttcatcaagaacctggacaaatctatagataacaaggcactttatgatactttttcg
gcatttggaaacattctgtcctgcaaggtggtgtgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacccaggaggctgccgacaaggctatcgagaagatgaatggc
atgctcctcaatgaccgcaaagtgtttgtgggcagattcaagtctcgaaaagagcgggaa
gctgagcttggagccaaagctaaggaattcaccaatgtttatatcaaaaactttggggaa
gaggtggatgatgagagtctgaaagagctattcagccagtttggtaagactctaagtgtc
aaggtgatgagagatcccagtgggaaatccaaaggctttggctttgtgagttatgaaaaa
cacgaggatgccaataaggccgtggaggagatgaatggaaaagaaatcagtgggaaagtc
attttcgtcggccgtgcacagaagaaagtggaacggcaggccgagttaaaacgaaaattt
gaacagctgaaacaggagagaattagtcggtatcagggggtgaacctctacattaagaac
ttggatgacaccattgatgatgaaaagttaaggaaagagttttctccttttggatcaatc
accagtgctaaggtgatgctggaggatgggagaagcaaagggtttgggtttgtctgcttc
tcatcccctgaagaggcaaccaaagcagtcacggagatgaacggacgcatcgtgggttcc
aagccactgtatgttgccctggcccagagaaaagaagagagaaaggctcacctgaccaac
cagtatatgcagcgggtggccgggatgagagcgctccccgccaatgccatcttaaatcag
ttccagcctgcagctgggggctactttgtgccagcagttccacaggctcagggaagacct
ccatattacacacctaaccagttagcacagatgaggcctaatccacgctggcagcaaggt
gggagacctcaaggcttccaaggaatgccaagtgctatacgccagtctgggcctcgtcca
gctcttcgccatctggctccaactggtaatgctccggcctctcgtggcctccctactacc
gctcagagagtcgggtctgagtgcccggaccgcttggctatggactttggtggggctggt
gccgcccagcaagggctgactgacagctgccagtctggaggtgttcccacagctgtgcag
agcctagcgcctcgtgctgctgttgccgccgctgctcctcgggctgttgcaccttacaaa
tacgcctccagtgtccgcagccctcaccccgccatccagcccctgcaggcaccccagcct
gcggtccacgtgcaggggcaggagccgctgaccgcctccatgctggccgcagcacccccg
caggaacagaaacagatgctgggtgaacgtttgttcccgctcatccagacgatgcactca
aacctggctgggaagatcacggggatgctgctggagattgacaactcggagctgctgcac
atgctggagtcccccgagtctctccgctccaaggtggatgaagctgtggcggtcctacag
gctcatcatgccaagaaagaagctgcccagaaggtgggcgctgttgctgctgctacctct
tag
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