Dickeya dianthicola: DDI_0457
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Entry
DDI_0457 CDS
T05141
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ddq
Dickeya dianthicola
Pathway
ddq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DDI_0457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddq03019
]
DDI_0457
03016 Transfer RNA biogenesis [BR:
ddq03016
]
DDI_0457
Enzymes [BR:
ddq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DDI_0457
Messenger RNA biogenesis [BR:
ddq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DDI_0457
Transfer RNA biogenesis [BR:
ddq03016
]
Prokaryotic type
tRNA degradation factors
DDI_0457
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
OB_RRP5_4th
KH_2
S1_RRP5
aRib
KH-I_KHDC4-BBP
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
ATO31625
LinkDB
All DBs
Position
429251..431371
Genome browser
AA seq
706 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMASIDDTAVFVTVVGAKHAKPGQGFFPLT
VNYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPDGFVNEVQVIATVVSV
NPQVSPDIVAMIGASAALSLSGIPFNGPIGVARVGYINDQYVLNPTTEELKTSRLDLVVA
GTEGAVLMVESEADLLSEDQMLGAVVFGHDQQQIVIENIKSLTAEAGKPKWNWQAPEVNV
ELHNRVQALSEARLGDAYRITEKQERYAQVDAIKSDVVAALLAEDDTLDESELRDILGSI
EKNVVRSRVLNGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER
DAQIIDELTGDRTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKPEA
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD
ILGDEDHLGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAST
DGEKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATAQSQETVPVSEEE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ttgcttaatccgatcgttcgtaaattccagtacggtcagcataccgtgacactggaaacc
ggcatgatggctcgtcaggctactgctgctgtgatggctagcattgatgatactgcggta
tttgtgaccgtagtgggtgccaaacacgccaagccgggtcagggctttttcccgctgacc
gttaactatcaggagcgtacctacgctgctggccgtatcccaggcggtttttttcgtcgt
gaaggccgtccgagcgaaggtgaaacgctgatctcccgtctgatcgaccgtccgattcgt
ccgctgttcccagatggttttgttaatgaagtgcaggttatcgccactgtggtttccgtt
aatccgcaggttagcccggatatcgttgccatgatcggtgcttctgctgcgctgagtctg
tccggcattccgttcaacggcccgattggcgtggctcgcgttggttacatcaacgaccag
tatgtgctgaacccgactaccgaagagctgaaaaccagccgtctggatctggtcgtcgcc
ggtacggaaggcgcggtgctgatggtggaatccgaagcggacctgctgagcgaagaccag
atgctgggcgcggtagtgttcggtcacgaccagcagcagattgttatcgaaaacatcaag
tcgctgacggcggaagccggcaagccgaaatggaactggcaggcgccggaagttaatgtc
gaactgcataaccgtgtgcaggcgctgtctgaagcccgtctgggcgatgcctaccgcatc
actgaaaaacaggagcgctacgctcaggttgatgccatcaaatccgacgtggttgcggct
ctgctggcggaagatgacacgctggacgagagcgaactgcgcgatattctcggcagcatc
gagaaaaacgtggtgcgtagccgtgtattgaacggcgagccgcgtatcgacggccgtgaa
aaagatatgatccgtggtctggacgttcgtaccggcgtactgccgcgtactcacggttcc
gcactgttcacccgtggcgagactcaggcgctggttaccgcgacgctgggtactgaacgt
gatgcgcagattattgatgaactgaccggcgaccgtaccgatcgtttcctgctgcactac
aacttccctccgtactccgtgggtgaaacgggtatggtcgggtcgccgaagcgccgcgaa
atcggtcatggccgtctggctaaacgtggcgtgttggctgtgatgccgaaaccggaagcc
ttcccgtacactgtgcgtgtggtatccgaaatcactgagtccaatggttcttcttctatg
gcgtccgtgtgcggtgcgtcgctggcgctgatggatgccggcgtgccgatcaaagctgcc
gttgccggtatcgcaatgggcctggtaaaagaaggcgataattatgttgttctgtcggac
atcctgggtgacgaagaccacctgggcgacatggatttcaaagtggccggtagccgtgaa
ggcgtgaccgcgttgcagatggacatcaaaatcgaaggcattacccgcgaaatcatgcag
gtagcgctgaatcaggccaagggtgcgcgtctgcacattctgggcgtgatggaacaagcg
attagtacgccgcgtggcgatatttccgaattcgcgccgcgtattcacaccatcaagatc
agcaccgacaagatcaaagatgtgattggtaaaggtggttcggtgatccgtgcgctgacc
gaagaaactggcaccaccatcgagattgaagacgacggtacggtgaaaattgcatcgacc
gacggcgaaaaagcgaaacatgccattcgtcgtatcgaagagatcacggctgagatcgaa
gtgggccgtatctatcagggtaaagtgacccgcatcgttgactttggcgcttttgtggcc
atcggcggcggtaaagaaggtctggttcatatttctcagatcgccgacaagcgtgttgag
aaagtgaccgattatctgcagatgggccaggaagtaccggtcaaggtactggaagtggac
cgtcagggtcgtgtccgtttgagcataaaagaagcaactgctcaatctcaggaaactgtt
ccggtttccgaggaagaataa
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