Dickeya dianthicola: DDI_0792
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Entry
DDI_0792 CDS
T05141
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ddq
Dickeya dianthicola
Pathway
ddq03030
DNA replication
ddq03430
Mismatch repair
ddq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ddq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DDI_0792
03430 Mismatch repair
DDI_0792
03440 Homologous recombination
DDI_0792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ddq03032
]
DDI_0792
03400 DNA repair and recombination proteins [BR:
ddq03400
]
DDI_0792
Enzymes [BR:
ddq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DDI_0792
DNA replication proteins [BR:
ddq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DDI_0792
DNA repair and recombination proteins [BR:
ddq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DDI_0792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
MutS_II
Motif
Other DBs
NCBI-ProteinID:
ATO31960
LinkDB
All DBs
Position
772531..776013
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGA
GIKPIIGADFYLQSEELGDELAHLTILAMNNEGYQNLTLLISRAYQRGYGAAGPTIDRAW
LVEHQAGLLLLSGGRHGDIGKFLLRGNQVLVEQSVAFYQQHFPQRFYLELVRTGRPDEES
YLHAAIELATAHGLPVVATNDVCFISQDDFEAHEIRVAIHDGFTLDDPKRPRNYSVKQYL
RSEEEMCELFADIPEALINTVEIAKRCNVTIRLGEYFLPQFPTGDMSTEDYLVMCSRKGL
EERLTFLFPDEAVRAQRRPEYDERLEIELNVINQMGFPGYFLIVMEFIQWSKDNDVPVGP
GRGSGAGSLVAYALNITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIDHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LGEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDPEGNHPVTQ
FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRGKQGLEPVDIAAIPLQDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDIQWQHETLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRSVFKEGAEKMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKIVGLVDECWRIGLKILPPDINSGLYHFHVNDEGEIVYGIGAIKG
VGEGPIEAIIEARNNDGYFRDLFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLADAMKSAEQHAKAEAIGQADMFGVLAETPEQVEQSYSTVPPWPEQVVLDGERETLGLY
LTGHPINQYLKEIERYAGGVRLKDMHPTERGKMTTAVGLVLAARVMVTKRGNRIGVCTLD
DRSGRLEVMLFTDALEKYQHLLEQDRILIASGQVSFDDFSGGLKMTVRELMDISEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRQDARARLRFGAAWRITPTD
GLLNDLRTLVGNEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaccacgttttgttcacctgcgtgttcacagtgactattccatgatcgatggg
ctggcgaaaaccggcccgttggtaaaaaaagcggccgcgctggggatgccggcgctggcg
atcaccgattttaccaacctgtgcgggttggtgaagttctatggcggcgcgcacggcgcc
ggcatcaagccgatcatcggcgcggatttttatctgcaaagtgaagagctgggcgacgaa
ctggcgcacctcaccattctggcgatgaacaacgaaggttatcagaacctgacgctgttg
atttcccgcgcctatcagcgcgggtacggcgcagctgggcctaccattgatcgggcatgg
ctggtggagcatcaggccgggttgctgttgctgtccggcgggcgtcatggcgacatcggc
aagtttctgctgcgcggcaatcaggtgctggtggagcagagcgtcgctttttatcagcag
cattttccgcagcggttttatctggaactggtgcgtaccgggcgaccggatgaggaaagc
tatctgcatgctgcgatagagctggcgaccgcgcacggcttgccggtcgtcgccaccaac
gatgtctgttttatcagtcaggatgacttcgaggcccatgagatccgcgtggcgattcat
gacggcttcacgctggacgacccgaaacgaccccgtaattatagcgtgaagcagtacctg
cgcagcgaggaggagatgtgcgagctgtttgccgatatccccgaagcgctcatcaacacg
gtagagatagccaaacgctgtaatgttactatccggctcggcgagtattttctgccgcag
ttccctaccggcgacatgtcgaccgaagactatctggtgatgtgttccagaaaagggctg
gaggagcgactgacgttcctgttcccggatgaggcggttcgcgcccagcgccgcccggaa
tacgacgaacgtctggaaattgaactcaacgtcatcaaccagatgggtttccccggctac
ttcctgatagtaatggagtttatccagtggtcgaaggacaacgacgtgccggtagggccg
ggacgcggttccggcgccggctcactggtggcgtatgcgctgaacatcactgatctggat
ccgctggagtttgacctgctgttcgaacgtttccttaacccggaacgtgtgtcgatgcct
gactttgacgtcgacttctgcatggaaaaacgtgatttggtgattgatcacgtggcggat
atgtacggccgcgacgcggtatcgcagatcatcaccttcggcacgatggcggccaaagcg
gtcatccgcgatgtcggccgggtgctggggcatccgtacggctttgtcgaccgcatttcc
aaactggtgccgcccgacccgggcatgacgctggaaaaagccttcgccgccgagccgcaa
ctgggcgaaatttacgaagcggatgaagaggtcaaggcgctgatcgacatggcgcgcaaa
ctggaaggggtgacccgcaacgccggcaagcacgccgggggtgtggtgatttcgccgacc
aaaattaccgattttgcgccgctgtactgcgacccggaaggcaatcacccggtcacccag
ttcgacaaaagcgatgtggaatacgccggtctggtgaaattcgacttcctcggcctgcgc
acgctgaccatcatcaactgggcgctggagatgatcaacgcccggcgcggcaaacagggg
ctggagccggtggatatcgccgccatcccgctgcaagacaagaaaagtttcgatatgctg
cagcgctcggaaaccactgcggtgtttcagcttgaatcgcgcggcatgaaagacctgatc
aaacgccttaagccggactgctttgaggatatgatcgctctggtggccctgtttcgccca
gggccgttgcagtcgggcatggtggataacttcattgaccgtaagcacgggcgcgaagcg
atctcctacccggatatccagtggcagcatgagacgctgaaaccggtgctggaaccgacc
tatggcatcattctgtatcaggaacaggtgatgcagattgctcaggtgctggcgggatat
accctcggcggtgcggatatgctgcgccgtgcgatgggtaagaaaaagcctgaagagatg
gccaagcagcgctcggtgtttaaagagggcgcggaaaagatgggcgtcgacggcgagctg
tcgatgaaaatcttcgacctggtggagaaattcgccggttacggcttcaacaagtcgcat
tcggccgcctacgcgctggtatcgtatcagacgctgtggctgaaggcccattatccggcg
gagttcatggcggcggtgatgaccgcggatatggacaacaccgacaagatagtcgggctg
gtggacgaatgctggcgtatagggctgaaaattctgccgccggacatcaacagcggtttg
taccattttcacgttaacgatgaaggcgagatcgtctacggcatcggcgccatcaaaggc
gtaggggaagggccgatcgaagccattatcgaagcgcgcaacaacgacggctatttccgc
gatttgtttgatctttgcgcccgtaccgatatcaaaaaactgaaccggcgggtgctggaa
aaactgatcatgtccggcgcgtttgaccggctggggccgcaccgggcggcgttgatgaat
tcgctggcggacgccatgaagtcggcggaacagcacgcgaaggcggaggccatcggccag
gcggatatgttcggggtgctggcggaaacgcctgagcaggtggaacagtcctacagcacg
gtgccgccgtggccggaacaggtggtgctggacggcgaaagggaaacgctggggttgtac
ctgactgggcacccgatcaaccagtatctgaaggaaattgaacgctatgcgggaggcgtg
cgtttaaaagacatgcaccccacggagcggggaaaaatgaccaccgccgtcgggttggtg
cttgccgcccgggtgatggtgaccaaacggggcaaccgtattggcgtctgcacgctggat
gatcgctccggtcgtctggaagtgatgctgtttaccgatgcgctggaaaaataccagcat
ctgctggagcaggatcgcattttgattgccagcggacaggtcagctttgatgacttcagc
ggcggacttaaaatgacggtcagagagttaatggatatcagcgaagcgcgggaaaaatac
gcgcgcggacttgctatctcgctgactgacaggcaaattgatgaccagttgttaaaccgt
ctccgtcagtcgttggaaccccatcgttcggggacgattccggtgcatctctactaccag
cgtcaggatgcgcgtgcccggctacgtttcggtgcggcatggcgaatcacgcccaccgat
gggttgctgaatgatttacggaccctggttggtaatgaacaggtagaactggaatttgac
taa
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