Dickeya dianthicola: DDI_0846
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Entry
DDI_0846 CDS
T05141
Name
(GenBank) Exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ddq
Dickeya dianthicola
Brite
KEGG Orthology (KO) [BR:
ddq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ddq03400
]
DDI_0846
DNA repair and recombination proteins [BR:
ddq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DDI_0846
Archaeal homologous recombinant proteins
DDI_0846
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
ABC_tran
cobW
nSTAND3
AAA_21
NTPase_1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ATO32014
LinkDB
All DBs
Position
complement(825929..829612)
Genome browser
AA seq
1227 aa
AA seq
DB search
MKILSLRLKNLNSLQGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHQTPR
LKVGPSQNELMTRHTAECLAEVEFEVKNVAYRAFWSQRRAHNSPEGNLQPPKVELALCAD
GKILTDKVNDKLTMTADITGLDFDRFTKSMMLSQGQFAAFLNADANQRAELLEELTGTDI
YGQISERVFEKHKDAQNQLETLRAQVATLELLSDEQRQALEQQLDAIRQQEQSLSLHREE
VLGHQRWYDTLLQHQQAQQQAQQQCAAQEQVQQQSQPQLDKLQRSEPAEKLRPRFDERER
ALREKQRLTQQLNSARQQIGRQQDALNLLKVQLEKALSTRQQHAEHRQQQETLINERILP
LDHHIATQQAQRAQQQQALDSLLELQKTLIAGLTKLQRQQEQTRQQLAEIETYRRQHSRH
QHLGSHIPLWQAQFPQQQKWQQDLQVLQEKTAQQQIQAEYLDQQHASLAEKHQAQQSACE
RARQLLTEHLQQDEQLEAEQPLADLRQQLAQRMAERPDRQQLATSVAVLQQLISQRTLLE
AQQLDTQRRIQALEDQQTQQRQDYQRQADHLTDLDKRHELELHIVSLERERRQLQPGKEC
PLCGSPHHPAVERYQALRPSETQLRLHALRQEVDALKAGVVQTETQLQLQKQHRQQQQNA
LDGVRRDDASLRLQCQSVSKRLLVDFDPLQLPALHQWIEESDAQEQSLQAQIASRERNQR
HIQESKDLLTSAQQLLAQTVQQLELNTQQQTSLHASREELRLLLEKTERELQRLHDSLRQ
TLETFDLTAPTLAQQEDWLRQRQTEWLRWQESEHEQHQCQPQLAALEAEIIASRQRQEET
DAAIKTYQQQLADTQRTLEQAQQQRWQLMGNQAVNDVLKQLRHVSQALELENQQAQQQWQ
QSQSQQSRLSGEIDSLEQQNQHAETTLQQLQAQFGEALAAAGFDDEAAFRHALLEEAERQ
QLLTLKERLSQRQQQVEALLQQANSTLEQHMATRPESMPEGISDWDIRQLISGLGDMVKA
EAAHQGELRQQLASDQQRRDKQRLLLEAITRGQQQCDDWGYLNQLIGSQKGDKFRRFAQG
LTLDHLVFLANRQLSRLHGRYLLQRKASDTLELQVADTWQADAVRDTRTLSGGESFLVSL
ALALALSDLVSTKTRIDSLFLDEGFGTLDGETLDTALDVLDNLNASGKSIGVISHVEAMK
DRIQVQIRVRKRNGLGVSQLDSAYAVK
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattcttagcctgcgcctgaaaaacctcaactcgctgcaaggcgagtggaaaatc
gatttcacccgcgagccgttcgccagtaacggcctgttcgccatcaccggccccaccggc
gcaggtaaaaccacgctgctggacgccatctgccttgcgctgtaccaccagacgccgcgc
ctgaaagtcggccccagccagaacgagctgatgacgcgccacaccgccgaatgcctggcg
gaagtggaattcgaggtgaagaacgtcgcctaccgtgctttctggagccagcgccgcgcc
cataacagcccggaaggcaatctgcagccgcccaaggtggagctggcgttgtgcgccgac
ggcaaaatcctcaccgacaaggtgaacgacaagctgacgatgaccgccgatatcaccggg
ctggattttgatcgtttcaccaaatcgatgatgctgtctcaggggcagttcgccgccttt
ctgaatgccgatgccaatcagcgcgccgaattgctggaagagctgaccggcaccgacatt
tacggccagatctcggagcgggtattcgagaaacacaaagacgcccaaaaccagctggaa
accctgcgggcgcaggtcgctacgctggaattgctgagcgacgaacagcgccaggcgctg
gagcaacaactggacgccatccgccagcaggaacagtcgctgtcgctgcaccgggaagag
gtgctggggcatcaacgctggtacgacactctgttgcagcaccagcaggcgcaacaacag
gcccagcagcagtgcgccgcgcaggaacaagtacagcaacagtcgcaaccgcagttggat
aaattacagcgtagcgaaccggcggaaaaactgcgcccgcgcttcgatgaacgcgagcgc
gcgctacgggaaaaacagcgcctgacccaacaactcaatagcgcgcgccagcagatcggc
cgccagcaggatgcgctcaatctgttgaaagtccagttggaaaaagcgctttccacccgc
cagcaacacgccgagcatcgccagcagcaggaaacgttgatcaacgaacgtatcctgccg
ctcgaccatcacatcgccacccagcaggcccagcgcgcccagcagcaacaggcgctggat
agtctgcttgaattgcaaaaaacgctgatcgccggcctgaccaaactgcagcgccagcag
gaacagacgcggcaacagctggccgagatagaaacctatcgccggcagcatagccgccac
cagcatctgggcagccatattccgctgtggcaggcgcaatttccccagcagcagaaatgg
cagcaagacttgcaggtgctgcaagaaaaaacggcgcagcagcagattcaggcggaatac
cttgaccagcaacacgcctcgctggcagaaaaacatcaggcgcagcagagcgcctgcgag
cgagcccggcaactgctgaccgagcatctgcaacaggatgaacaactggaagcggagcaa
ccgctggcggacctgcgccaacagttggcccagcgtatggccgaacggccggatcgccag
caactggccaccagcgtcgccgtgttgcaacagttgataagccagcgcaccttgctggaa
gcgcaacaactggatacccagcgccgcattcaggcgctggaagatcaacaaacccagcag
cgtcaggactatcagcgccaggccgaccatctgaccgacctcgacaagcgccatgaactg
gaactgcacatcgtcagtctggagcgcgagcgccggcagctgcaaccgggcaaagagtgc
ccgctgtgcggctccccgcatcacccggcggtggaacgctatcaggcgctgcgcccgtcg
gaaacccagctccggctgcatgcgctgcgacaagaggtggacgcgctgaaagccggcgtg
gtgcagaccgaaacccagcttcagttgcaaaaacagcaccgccagcagcagcaaaacgcg
ctcgacggcgtccggcgcgatgacgcgtcgctgcggctacagtgccaatcagtcagtaaa
cgcttacttgttgacttcgatccgctgcaactgccggcgctgcatcagtggattgaagag
tccgatgcgcaggagcaatcgttgcaggcgcagatcgccagtcgtgagcgtaatcagcgc
catattcaggaaagtaaggatttactcacctcggcgcagcaactgctggcgcagaccgtc
cagcaactggagctgaacacccagcagcagacgtcgctgcacgcatcgcgggaagaactg
cgactgttgctggaaaaaaccgaacgcgagttgcaacgcctgcacgacagcctccgccag
acgctggaaacgttcgacctgacggcgcccacgctcgcgcagcaggaagactggctgcgt
cagcgccagacggaatggctgcgctggcaggaaagcgaacacgagcagcatcagtgccag
ccgcaactcgccgcgctggaagcggaaatcatcgccagccggcagcggcaggaagaaacc
gacgccgccatcaaaacctatcaacagcaattggccgacacccagcgtacgctggaacag
gcgcagcaacagcgctggcagttgatgggcaatcaagcggtgaacgacgtactgaagcag
ttgcggcacgtcagccaggcgctggagctggaaaaccagcaggcgcagcagcaatggcaa
cagagccagtcgcaacaaagccgcctgagcggagaaatcgacagtctggaacagcaaaac
cagcatgccgaaaccacattgcagcagcttcaggctcagtttggagaagcgctggccgcc
gccggcttcgacgatgaagccgccttccgtcatgccttgctggaggaggccgagcgccag
caactcctcacgctaaaagagcggctcagccagcgtcagcagcaggtggaggcgttgttg
cagcaggcgaacagcacgctggagcaacacatggcgacccggccggaatcgatgccggaa
ggcatcagcgactgggatatccgtcagttgatctccggcctcggagacatggtaaaagcc
gaagccgcacatcagggcgaactgcgccagcaacttgccagcgatcagcaacgccgcgac
aaacagcgcctgttgctggaggctatcacccgcggtcagcaacaatgcgacgactggggc
tacctcaatcagttgatcggctcgcaaaaaggcgacaagttccgccgcttcgcgcagggg
ctgacgctggatcatctggtgtttctggctaaccgccagctgtcgcgcctgcatgggcgc
tatctgctgcaacgcaaagcatccgacacgctggaattgcaggtggccgatacctggcag
gccgacgcggtacgcgatacccgtacgctgtccggcggtgaaagttttctggtcagcctg
gcgctggcgctggcgctatccgacctggtcagcaccaaaacccgcatcgactcgctgttc
ctcgacgaaggcttcggcacgctggacggcgagacgctggacaccgcgctggatgtgctg
gataacctgaatgcgtcaggcaagagcatcggcgtgatcagtcacgtggaagcgatgaaa
gaccgtatccaggtgcaaatccgggtcagaaagcgcaacggtctgggcgtcagccagctc
gacagcgcctatgcggtgaaataa
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integrated database retrieval system
