Dickeya dianthicola: DDI_1517
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Entry
DDI_1517 CDS
T05141
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ddq
Dickeya dianthicola
Pathway
ddq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DDI_1517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddq03019
]
DDI_1517
Enzymes [BR:
ddq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DDI_1517
Messenger RNA biogenesis [BR:
ddq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DDI_1517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
AAA_22
P-loop_SecA
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ATO32685
LinkDB
All DBs
Position
1531950..1533308
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AA seq
452 aa
AA seq
DB search
MSFESLGLSADILRAVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSQRPSQAKGRRPVRALILTPTRELAAQIGENVLAYSQYLRLRSLVVFGGVSINPQMM
KLRSGVDILIATPGRLLDLEHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLAKLPSK
RQNLLFSATFSDEIKELAGKLLTNPASVEVVRRNTPSELVTQHVHYVDKKRKRELLSHLI
GKHDWRQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALANFKDGDIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAESTGEALSLVCVDEHKLLRDI
ERLLKREIPRMEIAGYEPDPTIKAEPIQNGRQGGRGGHGGAPRQGDRPQGGRPQGDRPHQ
PRRDGGASRPAGQRPEGQSARRRSPRKPASGQ
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatctctcggcctgagtgccgatattttgcgcgctgtggaagaacagggc
taccgtgagccgacgccggttcagcgtcaggcgattccggtagtgctggaagggcgcgac
ctgatggccagcgcccagaccggtaccggcaaaaccgctggtttcaccctgccgctgctg
caactgctgagtcagcgcccgtcgcaggcgaaaggccgccgcccggtgcgggcgttgatc
ctgacgccgacgcgtgaactggcggcgcagataggcgaaaacgtgctggcgtacagccaa
tacctgcgtctgcgctcgctggtggtgttcggcggcgtcagcattaatccgcagatgatg
aagctgcgcagcggcgtcgatattctgattgccacgccgggccgtctgctggatctggaa
caccagaacgcggttgacttgtcgcaggtggaaattctggtattggatgaagccgaccgt
atgctggacatgggctttatccacgatatccgccgggtgctggcgaagctgccgtccaaa
cggcagaatctgctgttttccgccaccttctccgacgagatcaaggaactggccggcaag
ctgctcaccaatccggcgtcggtggaagtggtgcgccgcaatactccgtccgaactggtg
acccagcacgttcattatgtggacaagaaacgcaagcgcgaactgctgtcgcacctgatc
ggtaaacacgactggcggcaggtgctggtgtttacccgcaccaagcacggcgccaaccat
ctggcggagcaactgaacaaagacggcatcaccgccgccgccatccacggcaacaagagc
cagggcgcgcgtacgcgtgcgctggctaatttcaaagacggcgacatccgcgttttggtg
gcgaccgatatcgccgcccgcgggctggacatcgaccagttgccgcatgtggtgaactat
gagctgccgaatgtgccggaagattacgtgcatcgcatcggccgcaccggtcgggcggag
tctaccggtgaagcgttgtcgctggtgtgcgttgatgaacacaaactgctgcgcgacatt
gagcgcctgctgaagcgcgaaatcccgcggatggagattgcgggttatgagccggacccg
accatcaaggccgagccgatccagaatggtcggcagggcgggcgtggtggtcacggcggt
gcgccgcgtcagggcgatcgtccgcaaggcggacgcccgcagggtgatcgcccacatcag
ccgcgtcgtgatggcggcgcctcgcgtccggccggacagcggccggaagggcaatccgct
cgccgccgctcgccgcgcaaaccggctagcggtcagtaa
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