Dickeya dianthicola: DDI_1748
Help
Entry
DDI_1748 CDS
T05141
Name
(GenBank) Exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ddq
Dickeya dianthicola
Pathway
ddq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ddq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
DDI_1748
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ddq03400
]
DDI_1748
Enzymes [BR:
ddq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
DDI_1748
DNA repair and recombination proteins [BR:
ddq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
DDI_1748
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DDI_1748
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DDI_1748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
DUF2610
Motif
Other DBs
NCBI-ProteinID:
ATO32916
LinkDB
All DBs
Position
complement(1767815..1769245)
Genome browser
AA seq
476 aa
AA seq
DB search
MQNKHTEPTFFIHDYETFGKHPAKDRPAQFAGIRTDLNFNVIGEPVVVYCQPTDDYLPDP
EAVMITGITPQVAQSRGIREAEFARQIHEAFSAPGTCIMGYNNIRFDDEVSRNLFYRNFY
DPYAYSWQNGNSRWDLLDMLRACYALRPDGIVWPENDDGFPSFRLEHLTRANGVEHTQAH
DAMSDVYATIAMARLLKQSQPKLFDYLYTLRNKNKVSALIDIPQMKPLVHVSGMFGAARG
NTSWIVPLAWHPDNRNAVIVCDLAGDIQPLLALNADELRTRLYTRRDRLAEDESPVPIKL
VHINKCPVLAPASTLRPEDAERLGIDRQHCLNNLQLLRQHASVREKVVALFADAPPFEAS
PDVDLQLYDGFFSDADRAAMDIIRKTDSQHLPALNLQFADRRVEELLFRYRARNFPGTLD
EQEQQRWLAHRREVFTPERVQDYFDALNQLYQQHDGDEKKTVLLKALFAYAQQLLA
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaaataaacacaccgaacccactttcttcattcatgactatgaaacctttggcaag
catccggccaaagatcgtccggcacagttcgccggcatccgcaccgatttgaattttaac
gtgattggcgagccggtagtggtctactgccaaccaaccgacgattacctgcccgacccg
gaagcggtgatgattaccggcatcacgccacaggtagcgcaaagccgagggatacgtgaa
gcggagtttgcccgccagatccatgaagcgttcagcgcgccgggtacctgcatcatgggg
tacaacaacattcggtttgacgacgaagtcagccggaatctgttttatcgcaacttctac
gatccttatgcttatagttggcaaaacggcaactctcgctgggatttactggacatgctg
cgcgcgtgctatgccttgcgcccagatggcattgtctggccggaaaacgacgacggtttt
cccagtttcaggctggaacatctgacgcgagccaatggcgttgaacacactcaggcgcac
gatgccatgtcggatgtgtatgccaccatcgcgatggcacgcctgcttaaacagtcgcag
ccaaaactgttcgactacctctacacattgcgcaacaagaacaaagtcagcgcgttaatc
gatattccgcaaatgaagccgctggtgcatgtttccggcatgtttggcgccgcgcgtggt
aatacgagttggatagtaccgctggcctggcacccggataaccgcaacgcggtcatcgtc
tgcgatctggcgggcgatattcagccgttgctggcgctgaatgcggatgaactgcgcacc
cggctttatacccgccgtgatcggctggcggaagatgaatcgccagtgcctatcaaactg
gtgcatattaataaatgtccggttctggcgccggccagcacgttacggccggaagatgcg
gagcggttgggcattgaccgccagcactgcctgaacaatctgcaactgctgcgtcagcat
gccagcgtacgggagaaagtggtggcgctgtttgccgatgctccgccgtttgaagcgtca
ccggatgtggacctgcaactgtacgatggttttttcagcgacgccgatcgggccgcgatg
gacatcatccgtaaaaccgactcccagcaccttccggccctgaacctgcagtttgccgat
cgccgggtggaggaattactgttccgctaccgggcgcgtaattttcccggcacgcttgat
gagcaggaacagcaacgctggctggcgcatcgccgggaggtctttaccccggagcgggta
caagactatttcgatgcgttgaatcagctctatcagcaacatgatggtgacgaaaagaaa
accgtgctgttgaaagcgttgtttgcctacgcgcaacagctactggcctga
DBGET
integrated database retrieval system
