Dickeya dianthicola: DDI_1942
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Entry
DDI_1942 CDS
T05141
Name
(GenBank) rhamnogalacturonate lyase
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ddq
Dickeya dianthicola
Brite
KEGG Orthology (KO) [BR:
ddq00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
DDI_1942
Enzymes [BR:
ddq01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
DDI_1942
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GFIT
Motif
Pfam:
CBM-like
fn3_3
Rhamnogal_lyase
CarboxypepD_reg
SdrD_B
CarbopepD_reg_2
Ig-like_KY
NOMO1-like_2nd
SpaA
DUF2606
Ig_DR_A0283-like
EMC7_beta-sandw
Motif
Other DBs
NCBI-ProteinID:
ATO33110
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Position
1959684..1961396
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AA seq
570 aa
AA seq
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MQGRTYLIAVSILCSSLAQAASSSDVSMALSGMKAQIDNGLVSVAIGSDGSIGTLSNGSQ
NLIDKTNSQVNALGKSSTGYLDYYSGSFLKFKPQQISVIENSKNIVHVAYVDNETSTLSL
EYHFIVRRGVSGVYSYAVARNDTSSNLTVSELRGVYRFNPFLLDHISNGIHTTKPNLYSQ
LTNAEKIQDETWKLSDGSYYSKYDFAGYMRKTPVWGVYGNNVGAWIVPGSTEYFSGDDTK
QDLMVHQDGLAIMYMTGSHFGTPDLVAPPGWQKLYGPWLLYVNAGTDEQMYRDALTRSQQ
EMADWPYRWVNDSRFPVDRASVTGNVNTTQPLNVTLSSSLNEASDVQTLGYAFTANTDSQ
GNFRFDNVRKGKYTLTIYANGGTRPGVLYGDVVNVTDTTSLPAIHLSEAAPVLWAIGNSD
RLAAEFRFGDQLRNYHWQNDVPANLTYTVGQSSPAQDWYYAQTNPGSWNVNYIDRADGIG
RVLNVAFAAASNRGMTNPTTPSLSVLVNGTKVKDIRYDNDKSVYRGALTSGKYHYERISI
DSSLLRDGANTITFTLNGGTFMYDVMTLTK
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggcagaacatatcttatcgcagtcagcatactctgttcttcgctggcgcaggcg
gcatcatcgtctgatgtcagtatggcgctctcagggatgaaagcacaaattgataatgga
ctggtttccgtcgcaattggcagcgatggcagcattggtactctgtcaaacggtagccag
aatcttatcgataaaaccaacagtcaggtgaatgcactgggtaaaagtagtaccggttat
ttggattattattcaggctcatttttgaagtttaaaccacagcagatttctgtcattgaa
aacagcaaaaacattgtacatgttgcttatgtggataatgaaaccagcacattgagcctg
gaatatcattttattgtgcggcgtggcgtcagcggggtttatagctatgctgtggcgcgg
aatgatacgtcatccaatcttacggtaagcgaattacgcggtgtataccggtttaatcct
tttttgctggatcatatctccaatggtattcacaccacgaaacccaatctgtattcccag
cttactaacgctgagaagattcaggatgaaacctggaaattatcggatggcagttattat
tccaaatacgattttgccggttatatgcgcaaaactccggtgtggggcgtgtacggtaat
aatgtcggcgcgtggattgtaccgggcagtaccgagtatttttctggtgatgacaccaaa
caggatttgatggtgcatcaagatgggctggcgattatgtatatgacgggatcgcatttc
ggcacaccggatctggtcgcgccgcctggctggcagaaactgtatggtccctggttgctg
tatgtgaatgccggcacggatgagcagatgtatcgtgatgcgctgacgcgcagccagcag
gagatggccgactggccctaccgctgggtcaatgacagccgttttccggtggatcgcgcc
agcgtgaccggcaatgtcaataccacccagccgctgaatgtgacgctatcgtcttcgctg
aatgaagcgtcggatgtacagacgttggggtatgcctttaccgctaataccgacagtcag
ggaaattttcgctttgataacgtgcgtaaggggaaatacaccctgaccatttacgctaat
ggcggtacccgacctggcgtgctctacggtgatgtggtgaatgtaaccgacactacctcg
ttacccgctattcatttgtccgaagccgcgccggtgttgtgggctatcggcaatagtgat
cggttggcggcggaattccggtttggcgatcagttacgcaattatcactggcagaatgat
gtaccggctaatctgacttataccgtgggtcagtcgagcccggcgcaggactggtattac
gcccagaccaatcccggcagttggaatgtgaattatatcgaccgcgccgacggcatcggc
agggtgctgaatgtggcgttcgctgccgccagcaaccggggcatgaccaatcccactacg
ccttcgctgtcagtcttggtcaacggcaccaaggttaaagacattcggtatgacaatgac
aaatcggtgtaccgcggtgcgctgaccagcggcaaatatcactacgaacgtatttcgatc
gacagtagtttgctgcgtgatggcgctaataccattaccttcacactcaatggcggcacc
ttcatgtacgacgtcatgacgttaacgaaataa
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