Dickeya dianthicola: DDI_3088
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Entry
DDI_3088 CDS
T05141
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
ddq
Dickeya dianthicola
Brite
KEGG Orthology (KO) [BR:
ddq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ddq03016
]
DDI_3088
Enzymes [BR:
ddq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
DDI_3088
Transfer RNA biogenesis [BR:
ddq03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
DDI_3088
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
ATO34256
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All DBs
Position
3196297..3196830
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AA seq
177 aa
AA seq
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MTPTRRLFFALSLPDAIGQQIVHWRAAQFAPEAGRPVAAANLHLTLAFLGEVSDAKMQVL
QTLAGRIRQPAFTFNLNDAGHWPRPGVVWLGCRQAPRGLLQLADMLRSQAARNGCYQPPQ
PFHPHITLLRGATRPVPVPAATFGWTVQAEQFFLYESRAEAGRTHYQPVAHWPLPTR
NT seq
534 nt
NT seq
+upstream
nt +downstream
nt
atgaccccgacccgccgcctgttttttgccctgtcgctgccagacgcgataggccagcag
atcgtacactggcgcgccgcgcaattcgcccccgaagccgggcgcccggtagcggcggcc
aatctgcatctgacgctggccttcctcggcgaggtcagcgacgccaaaatgcaggttttg
cagacactggccggccgaatccgccagccggcgtttacctttaatctgaacgatgccggc
cactggccgcgtcctggcgtggtgtggctcggttgtcgtcaggcgccgcgcggattactg
caactggcggatatgttacgctcgcaagcggcgcgcaacggctgttatcaaccccctcag
ccgtttcatccgcatatcacgctgttgcgcggcgctacccgcccggtgccggtaccggcc
gccacgttcggctggacggtgcaggccgagcaattttttctatacgaatcgcgcgccgaa
gccggccgaacccattatcagccagtcgcccactggccgttgccgacacgctga
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