Dickeya dianthicola: DDI_3823
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Entry
DDI_3823 CDS
T05141
Name
(GenBank) DNA-directed RNA polymerase alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ddq
Dickeya dianthicola
Pathway
ddq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ddq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DDI_3823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ddq03021
]
DDI_3823
03400 DNA repair and recombination proteins [BR:
ddq03400
]
DDI_3823
Enzymes [BR:
ddq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DDI_3823
Transcription machinery [BR:
ddq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DDI_3823
DNA repair and recombination proteins [BR:
ddq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DDI_3823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
ATO34991
LinkDB
All DBs
Position
complement(3947127..3948116)
Genome browser
AA seq
329 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGD
VEIVKPQHVICHLTDENASINMRIKVQRGRGYVPASARIHTEEDERPIGRLLVDACYSPV
ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP
EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIADE
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgtgacagagtttctaaaaccgcgcctggtagatatcgagcaagtcagt
tcgacgcacgccaaggtgacccttgagccgttagagcggggcttcggccatactcttggt
aacgcactgcgccgtattctgctttcatccatgcctggttgcgcggtgaccgaggttgag
attgatggtgtactgcacgagtacagcaccaaagaaggcgtacaggaagatatcctggaa
atcctgctcaacctgaaagggctggcggtgagagttcaaggcaaagatgaagttattctt
accctgaataaatctggcattggccctgtgactgcagccgacatcacccacgacggtgat
gtcgaaatcgtcaagccacagcatgtgatctgccacctgaccgatgagaacgcatctatc
aatatgcgtatcaaagttcagcgtggtcgtggttatgtgccggcgtctgcccgtattcat
acggaagaagatgagcgcccgatcggtcgcctgttagtcgatgcttgctacagccctgtt
gagcgtatcgcttacaatgttgaagctgctcgtgttgaacagcgtaccgacctggacaag
ctggttatcgagatggaaaccaatggtacgatcgatcctgaagaggcgatccgccgtgcg
gcgaccattctggctgaacaattggaagctttcgttgacttacgtgatgtacgtcagccg
gaagtgaaagaagagaaaccagaattcgatccgatcctgctgcgccctgttgacgatctt
gaattgactgtccgctctgctaactgccttaaggcagaagctatccactacatcggtgat
ctggtacagcgtaccgaggttgaactgcttaaaacgcctaacctgggtaaaaaatctctt
actgagattaaagacgtgctggcttctcgtggtttgtctctgggcatgcgcctggaaaac
tggccgccggcaagcattgctgatgagtaa
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