Dickeya dianthicola: DDI_3898
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Entry
DDI_3898 CDS
T05141
Name
(GenBank) Pectate lyase B precursor
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ddq
Dickeya dianthicola
Pathway
ddq00040
Pentose and glucuronate interconversions
ddq01100
Metabolic pathways
ddq02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ddq00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
DDI_3898
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
DDI_3898
Enzymes [BR:
ddq01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
DDI_3898
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
ATO35066
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Position
4007192..4008319
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AA seq
375 aa
AA seq
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MKSFIAPIAAGLLLAFSQSSLAADTGGYTKTDGGDIAGAVKKTATSMQDILDIVEAAKVD
ANGKKVKGGAYPLVITYTGNEDSLINAAAANICGQWSKDARGVEIKDFTKGLTIIGANGS
SANFGLWIVNSADVVVRNMRIGYLPGGAQDGDMFRIDNSPNVWLDHNELFAANHECDGTK
DGDTTFESAFDIKKGATYVTISYNNIHGVKKVGLSGFSSSDTAERNITYHHNIYSDVNAR
LPLQRGGNVHAYNNLYTGLTSSGLNVRQNGKALIENNWFENAVNPVTSRYDGSNFGTWVL
KGNNITKPADFATYNITWTADTKAYVNADSWTSTGTYPTVPYSYSPVSAQCVKDKLANYA
GVGKNLATLTNAACK
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcattcattgctccgattgccgccggtctgctgctggcctttagtcaatccagc
ctggctgcggataccggtggttataccaagactgacggtggtgatatcgctggcgccgta
aagaaaacggccacctcgatgcaggatattcttgatatcgttgaagcggccaaagttgac
gccaacggcaagaaagttaaaggcggagcttatccgctggttattacctataccggtaac
gaagacagcctgatcaatgccgccgccgctaacatctgcggccagtggagcaaagatgcc
cgtggcgtggaaatcaaagatttcaccaaaggcctcaccatcatcggcgccaacggttct
tccgctaacttcggtctctggatagtgaactccgccgacgtcgtagtacgcaacatgcgt
atcggctacctgccgggcggcgctcaggatggcgatatgttccgtatcgacaactcgccg
aatgtgtggctggaccacaacgaactgtttgctgccaaccacgagtgcgacggcaccaaa
gacggcgacactaccttcgaatccgcctttgacatcaagaagggcgcaacttacgtcacc
atttcctacaacaacatccacggtgtgaagaaagtcggtctgtctggtttcagttcctcc
gacacggctgaacgcaacatcacctatcaccacaacatctacagcgacgtcaacgcccgc
ctgccgttgcagcgcggtggtaacgtccatgcgtataacaacctgtacaccggcctcacc
agttccggcctgaacgtccgtcagaacggcaaggcgctgatcgaaaacaactggttcgaa
aatgcggtgaacccggtcacgtcccgctatgacggcagtaacttcggcacctgggtgctg
aagggcaacaacatcaccaaaccggctgatttcgccacctacaacatcacctggacagcc
gacaccaaggcttacgttaacgccgacagttggacttccactggcacctacccgaccgta
ccttacagctacagcccggttagcgcacagtgcgtgaaagacaaactggccaactacgcc
ggtgtgggcaaaaacctggccacgctgaccaacgctgcctgtaaataa
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