Dickeya dianthicola: DDI_3965
Help
Entry
DDI_3965 CDS
T05141
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ddq
Dickeya dianthicola
Pathway
ddq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DDI_3965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddq03019
]
DDI_3965
03400 DNA repair and recombination proteins [BR:
ddq03400
]
DDI_3965
Enzymes [BR:
ddq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DDI_3965
Messenger RNA biogenesis [BR:
ddq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DDI_3965
DNA repair and recombination proteins [BR:
ddq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DDI_3965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ATO35133
LinkDB
All DBs
Position
complement(4083778..4085607)
Genome browser
AA seq
609 aa
AA seq
DB search
MSTADVLNKETLAMQVLRETFGYQQFRPGQQAIINAAISGRDCLVIMPTGGGKSLCYQIP
ALVLEGLTLVVSPLISLMKDQVDQLQAYGVAAACLNSTQTREQQQAVFSACRRGELKLLY
IAPERLTTDGFLEQLTHWNTTLIAIDEAHCISQWGHDFRPEYRALGQIKQQFPALPIVAL
TATADETTRQDIARLLDLRDPLTNISSFDRPNIRYTLVEKFKPLDQLWLFVQGQRGKSGI
VYCNSRAKVEDLCARLQNRGLSVGAYHAGLENDRRAQVQEAFLRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAALFYDPADMAWLRRCLEEKPAGVQ
LDIERHKLNAMGAFAEAQTCRRLVLLNYFGENRQQACGNCDVCLDPPRRYDGLVDAQKAL
SCVYRVGQRFGIGYIAEVLRGANNQRIREFGHDKLPVYGLGKDKTQEQWVSILRQLIHLG
LLAQNIAHHSALQLTESARPVLRGEAPLQLAVPRVISLSKPRAGQKTYGGNYDRKLFAKL
RKLRKSIADEDNIPPYVVFSDATLLEMAELLPVTASELLAVNGVGQRKLERFGAPFMTLI
RDHLDSGDD
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtgtctacggcagacgtattgaataaagaaacgctggcgatgcaggtgctgcgtgaaacc
ttcggctaccagcaatttcggccgggtcagcaggccattatcaatgccgccatcagcggg
cgcgactgcctggttatcatgccgaccggcgggggaaagtccctgtgttatcagattccg
gcgctggtgctggaggggctgacgctggtggtgtcgccgctgatctccctgatgaaggat
caggtcgatcagttgcaggcttatggcgtggcggcggcctgcctcaattccacccagacc
cgtgagcagcagcaggcggtgttcagcgcctgccgccgcggcgaactgaagctgctgtac
atcgcgccggaacgcctcaccaccgacgggtttctggagcaactgacgcactggaacacg
acgcttatcgccatcgacgaagcgcactgcatttcccagtgggggcacgattttcgcccg
gaataccgcgcgctggggcagataaaacagcagtttcccgccctgccgattgtggcgctg
accgccaccgccgatgaaaccacccgtcaggatatcgcccgtctgctggatttgcgcgac
ccgcttaccaatatcagcagttttgaccgccccaacatccgctacacgctggtggaaaaa
ttcaaaccgctcgaccagttgtggctgtttgtacaagggcagcgcggcaagagcggtatc
gtgtattgcaacagccgggccaaggtggaagacctgtgcgcccggttgcagaaccgtggg
ctgagcgtcggtgcctatcacgccgggctggaaaacgaccgccgtgctcaggtgcaggag
gcgtttttgcgcgacgacctgcaggtggtggtcgccaccgtggcgttcggcatgggcatc
aacaaacctaacgtgcgcttcgtggtgcatttcgacatcccgcgcaatatcgagtcttac
tatcaggaaaccggccgcgccgggcgcgacggcctgcccgccgaagcggcgctgttctac
gacccggcggacatggcctggctgcgccgctgtctggaagaaaaaccggccggcgtgcag
ttggatatcgagcggcacaaactgaatgcgatgggggcgtttgccgaagcgcagacctgc
cgccgtctggtgttgctcaactattttggcgaaaaccgtcagcaagcgtgcggcaactgc
gatgtctgccttgacccgccccgacgctacgacggactggtggacgcgcagaaagcgctg
tcctgcgtctaccgcgtcgggcaacggttcggcatcggttacatcgccgaagtgctgcgc
ggcgccaacaatcagcgcatccgcgaattcggtcacgacaaactgccggtgtacggcctg
ggcaaagataaaacacaggagcagtgggtcagcattctgcgtcagttgatccacctcggg
ctgctggcgcagaacatcgcccatcattccgcgctgcaactgaccgagtcggcgcggccg
gtgctgcgcggcgaggcgccgctgcaactggcggtgccgcgcgtcatcagcctgagcaag
ccgcgcgccggccagaaaacctacggcggtaattacgaccgtaaactgttcgccaaactg
cgcaaactgcgtaaatccatcgcggatgaagacaacattccgccgtacgtggtgtttagc
gatgccacgctgctggaaatggccgaactgctgccggtcaccgccagtgaactgctggcg
gtcaatggcgtcggccagcggaaactggagcgatttggcgccccctttatgacgttgatt
cgtgatcatctcgatagcggcgacgactga
DBGET
integrated database retrieval system
