Dickeya dianthicola: DDI_4008
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Entry
DDI_4008 CDS
T05141
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ddq
Dickeya dianthicola
Pathway
ddq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DDI_4008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ddq03021
]
DDI_4008
03019 Messenger RNA biogenesis [BR:
ddq03019
]
DDI_4008
Transcription machinery [BR:
ddq03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
DDI_4008
Messenger RNA biogenesis [BR:
ddq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DDI_4008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
AAA_22
AAA_25
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
ATO35176
LinkDB
All DBs
Position
complement(4125762..4127021)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaaaaatacgccggtgtctgagttaattactcttggcgaaaat
atggggctagagaatctggctcgcatgcgtaaacaggatattattttcgctatcctcaag
cagcacgcgaaaagtggtgaagacatctttggcgatggtgtgctggaaatattgcaggat
ggtttcggtttcctccgctccgcagacagttcctacctcgccggccctgatgacatctac
gtttctcccagccaaatcagacgctttaacctccgcactggcgacaccatttccggtaag
attcgtccgccgaaagaaggtgaacgctatttcgcgctgctgaaggtcaacgaggtcaac
tacgacaaaccggaaaatgcccgcagcaaaatcctgtttgaaaacctgacgccgctacac
gccaattcgcgtctgcgtatggaacgcggcaacggttccaccgaagacctgacggctcgc
gtactggatctggcctcgccgataggccgtggtcagcgtggcttgatagtggcgccgccg
aaagccggtaaaaccatgctgctgcagaatatcgcccagagcatcgcttacaaccaccct
gactgcgtgctgatggtgctgctgattgacgaacgtccggaagaagtgacggaaatgcag
cgtctggtgaaaggggaagtggttgcgtcgaccttcgatgaaccggcctcccgccacgtt
caggtcgccgaaatggtgatcgagaaagccaagcgcttggttgagcacaagaaagacgtg
attatcctgctggactccatcacccgtctggcgcgtgcttacaacaccgtggtgccggcc
tccggcaaggtactgaccggtggtgtcgacgccaacgccctgcaccgtccgaaacgcttc
ttcggcgcggctcgtaacgttgaagagggcggtagcctgacaatcatcgccacagccttg
atcgataccggttcgaagatggacgaagtgatttacgaagagttcaagggcactggtaac
atggaactgcacctgtctcgtaagattgccgagaagcgcgtgttcccggccatcgactac
aatcgctccggtacccgtaaggaagagctgttgaccacctccgaggaactgcagaaaatg
tggatcctgcgcaagatcatccacccgatgggcgagatcgatgcgatggagttcctgatc
aacaagctggcgatgaccaaaaccaacgacgaattcttcgatatgatgaaacgatcgtaa
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