Dickeya dianthicola: DDI_4107
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Entry
DDI_4107 CDS
T05141
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
ddq
Dickeya dianthicola
Brite
KEGG Orthology (KO) [BR:
ddq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ddq03021
]
DDI_4107
Transcription machinery [BR:
ddq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DDI_4107
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
UCR_14kD
HTH_10
Motif
Other DBs
NCBI-ProteinID:
ATO35275
LinkDB
All DBs
Position
complement(4240086..4240943)
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AA seq
285 aa
AA seq
DB search
MTKDMQTFALVPQGSLEGYIRAANAYPMLTAEEERALAERLHYHGDLDAAKQLILSHLRF
VIHVARNYSGYGLPQADLIQEGNIGLMKAVRRFNPDVGVRLVSFAVHWIKAEIHEYVLRN
WRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVELVARELGVTSKDVREMESRMAAQDM
TFDPSPEDDAQPGQPMAPMLYLQDKSSDFADGIEEDNWETHAADKLTYALEGLDERSQHI
IRARWLDDDNKSTLQELADHYGVSAERIRQLEKNAMKKLRVAIEA
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaagatatgcaaactttcgccttagttccccagggcagtctggaagggtacatc
cgtgccgccaacgcctatccgatgctgacggcggaggaagagcgggcgctggctgaacgg
ctgcattatcacggggatctggacgccgccaagcagctgattctttcacatctgcgtttc
gttattcatgttgcccgtaactattcaggttacggtctgccgcaggcggacctgattcag
gaaggcaacatcggcctgatgaaggcggtgcgccgcttcaacccggatgtgggcgtgcgt
ctggtgtcgttcgccgtacactggatcaaggccgaaattcacgaatacgtactgcgcaac
tggcgtatcgtcaaggtggcgaccaccaaggcgcagcgcaaactgttcttcaatctgcgt
aagaccaagcagcgtttgggctggtttaatcaggacgaagtggaactggtggcgcgcgag
ttgggtgtgaccagcaaggatgtccgtgaaatggaatcccgcatggccgcgcaggacatg
acgtttgatccgtcgccggaagacgacgcgcagccgggccagccgatggcgccgatgctg
tacttgcaggacaaatcttccgactttgccgatggcatcgaagaggacaactgggaaacc
catgcggcggacaagttgacctatgcgctggaagggttggacgaacgcagccagcatatt
atccgcgcccgctggctggatgacgacaataagtccaccttgcaggaattggccgatcat
tacggcgtgtccgctgagcgtatacgtcagttggaaaagaatgccatgaagaaactgcgg
gtggctattgaagcgtaa
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