Dickeya dianthicola: DDI_4313
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Entry
DDI_4313 CDS
T05141
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
ddq
Dickeya dianthicola
Brite
KEGG Orthology (KO) [BR:
ddq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ddq03032
]
DDI_4313
03400 DNA repair and recombination proteins [BR:
ddq03400
]
DDI_4313
Enzymes [BR:
ddq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
DDI_4313
DNA replication proteins [BR:
ddq03032
]
Prokaryotic type
DNA Topoisomerases
DDI_4313
DNA repair and recombination proteins [BR:
ddq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DDI_4313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
ATO35481
LinkDB
All DBs
Position
4448094..4450505
Genome browser
AA seq
803 aa
AA seq
DB search
MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIV
VTIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV
SVVNALSEKLELVIRREGKVHRQEYRHGVPQAPLGATGDADATGTTVRFWPSLETFTNMV
EFEYDILAKRLRELSFLNSGVSIRLRDEREENKADHFHYEGGIKAFVEYLNRNKTPIHPQ
VFYFSAEKDSIGVEIAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYMDK
EGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESLMNDRLVD
YLMENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSE
LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG
RDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVFIAQPPLYKVKK
GKQEQYIKDDEAMDQYQIMLALDSATLHTNAHAPALAGEPLEKLVAEYYGAQKLIDRMER
RYPRALLNALVYQPALTEARLNDQAQAQQWIDSLIHYLNEKEQHGSTYSFLLRQSNERHE
PVLRVRTHGVDSDYALDLAFVQGNEYRKINLLGEKLRGLIEDSAYVERGERKQPVASFEQ
ALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADELFTTLM
GDAVEPRRAFIEENALKAANIDI
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaattcttatgactcctcaagtatcaaggtattaaaagggctggatgcggtccgt
aaacgcccgggaatgtatatcggtgatacggatgacggaaccggtctgcatcatatggta
ttcgaggtggtggacaacgctattgacgaagcgctcgctggctactgtaaagatattgtc
gtcaccattcatgccgacaactcggtgtcggtgcaggacgacggccgtggtattcctacc
ggcatccacgaagaagagggcgtgtccgccgccgaagtgatcatgaccgtgctgcacgcg
ggcggcaagtttgacgacaactcctacaaggtgtccggcggtctgcatggggtgggggta
tcggtcgtgaacgccctgtccgagaagctggaattggttatccgccgcgaaggcaaagtg
catcgtcaggaataccgccacggcgtaccgcaggcgccgctgggcgcgacgggcgacgcc
gacgccaccggcaccacggtgcgtttttggccgagtctggaaactttcaccaatatggtc
gagtttgaatatgacattctggccaaacgcctgcgtgagctgtcgttcctcaactccggc
gtgtccatccgcctgcgcgacgaacgcgaagagaacaaggccgatcatttccactacgaa
ggcggcatcaaagccttcgttgagtacctgaaccgcaacaagacgccgatccacccgcag
gtgttctatttcagcgccgaaaaagacagcatcggcgtggaaatcgccatgcagtggaac
gacggttttcaggaaaatatttactgctttaccaacaacattccgcagcgcgacggcggt
acccacctggccggtttccgcgccgccatgacccgtacgctgaataactacatggacaag
gaaggctacagcaagaaagccaaagtcagcgccactggcgatgacgcgcgcgaagggctg
attgcggtggtatcggtgaaggtgccggatccgaaattctcttcccagaccaaagataag
ctggtgtcttccgaggtgaaatcagcggtggaatcgctgatgaacgaccgtctggtggac
tacctgatggaaaaccccagcgacgccaaaatcgtggttggcaaaatcatcgacgccgcc
cgcgctcgtgaagccgcacgtaaagcccgtgagatgacccgtcgtaaaggtgcgctggat
ctggctggtctgccgggcaaactggcggactgtcaggagcgtgacccggcgttgtctgaa
ctgtatctggtggagggtgactccgcaggcggttccgccaagcagggtcgtaaccgtaag
aatcaggccattctgccgctaaaaggtaagatcctgaacgtggaaaaagcgcgtttcgat
aaaatgttgtcgtcgcaggaagtggcgacgctgatcaccgcgctcggctgtggtatcggc
cgcgacgagtacaacccggacaaactgcgttaccacaacatcatcatcatgaccgatgcg
gacgtcgacggctctcacattcgtactctgctgctgacctttttctaccgccagatgccg
gaaatcgtcgagcgcggccatgtgttcatcgcccagccgccgttgtacaaggtgaagaaa
ggcaagcaggagcagtacatcaaagacgacgaggcgatggaccagtaccagatcatgctg
gcgctggatagcgccacgctacacaccaacgcgcacgcaccggcgctggcgggcgagccg
ctggagaaactggtggcggagtactatggcgcgcagaagttgatcgaccgtatggagcgc
cgctatccgcgcgcgctgctcaacgcgctggtctatcaacccgcgctgacggaagcgagg
ctgaacgatcaggcgcaggctcagcagtggattgactcgctgattcactatctcaacgag
aaagagcagcacggcagtacttatagttttctgctgcgccagtcgaacgagcgtcatgag
ccggtgctgcgggtgcgtacccacggggtggattcggattatgcgctggacctggcattt
gtgcagggcaacgagtaccgcaaaatcaatctgctgggcgaaaaactgcgtggtttgatt
gaggatagcgcttacgtggagcgcggtgagcgcaaacagccggtcgccagcttcgaacag
gcgctggactggctggtgaaagagtcgcgccgtggcctggcgattcagcgctataaaggt
ctgggcgagatgaacccggaacagctgtgggaaaccacgatggacccggaaagccgccgt
atgctgcgcgtgacggtaaaagacgccatcgccgccgacgagctgttcaccaccctgatg
ggcgacgctgttgaaccacgccgcgcctttatcgaagaaaacgccctgaaagcggcgaat
attgatatttga
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