Dickeya dianthicola: DDI_4477
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Entry
DDI_4477 CDS
T05141
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ddq
Dickeya dianthicola
Pathway
ddq03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ddq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DDI_4477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ddq03400
]
DDI_4477
Enzymes [BR:
ddq01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
DDI_4477
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
DDI_4477
DNA repair and recombination proteins [BR:
ddq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DDI_4477
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ATO35645
LinkDB
All DBs
Position
4617366..4618175
Genome browser
AA seq
269 aa
AA seq
DB search
MPELPEVETSRRGISPWLVGHTILYTEVRNARLRWPVSPEILSLSDTPVLSVQRRAKYLL
IELPTGWIIVHLGMSGSLRVLPEYSEPDKHDHVDLVMDSGKVLRYTDPRRFGAWLWCADP
ATSSVLAHLGPEPLSDDFSGRSLFAQSRGRKTPVKLWIMDNKLVVGVGNIYASESLFNAG
ILPSRPAGSLSEVEADQLVRSIKQVLQRSIEQGGTTLRDFLQSDGKPGYFAQELQVYGRS
GEPCHHCGTPIESIKQGQRSTFFCKCCQR
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattacccgaagtggaaaccagtcgccggggcatttcaccctggctggtcggt
cataccattttgtataccgaggtgcgcaacgcgcgcctgcgctggccggtctctcctgaa
attctatcgctgagcgatacgccggtgttgagtgtgcagcggcgcgccaaatatctgctg
attgagctgccgaccggctggataatcgtgcatttgggtatgtccggtagtctgcgggtg
ttgccggaatacagcgagccggataaacatgaccatgtcgatctggtgatggacagcggt
aaggtgctgcgttataccgacccgcgccgtttcggcgcctggctgtggtgtgctgatccg
gcgaccagttcggtgctggcgcatctggggccggaaccgctgagcgacgacttttccggt
cgctctctgtttgcccaatcccgcggccgcaaaacgccagtcaagctgtggattatggac
aacaagctggtggtgggcgtaggcaacatctacgccagcgagtcgctgtttaacgccggt
attctgccgagccgaccggcgggttcgttatctgaggttgaagcagaccaactggtacgt
tccatcaagcaggtattgcaacgctcgattgagcaaggcggcaccacactgcgggatttc
ctgcagtccgatggcaaaccggggtattttgcgcaggagttacaggtctatggccgcagc
ggcgagccttgtcaccattgcggtacgccgattgagagcatcaagcagggccagcgcagc
acttttttctgtaaatgttgccagcggtaa
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