Deinococcus deserti: Deide_11640
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Entry
Deide_11640 CDS
T00880
Name
(GenBank) putative transcription termination factor rho
KO
K03628
transcription termination factor Rho
Organism
ddr
Deinococcus deserti
Pathway
ddr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Deide_11640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ddr03021
]
Deide_11640
03019 Messenger RNA biogenesis [BR:
ddr03019
]
Deide_11640
Transcription machinery [BR:
ddr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Deide_11640
Messenger RNA biogenesis [BR:
ddr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Deide_11640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
AAA_22
NACHT
Spore_III_AA
ATPase_2
AAA
AAA_24
MMR_HSR1
nSTAND_NTPase5
FeoB_N
Motif
Other DBs
NCBI-ProteinID:
ACO46070
UniProt:
C1CV53
LinkDB
All DBs
Position
complement(1409043..1410317)
Genome browser
AA seq
424 aa
AA seq
DB search
MTEPTTALPYHELQQKILPELHLIAAGYGIENYRKLKKDALALAILEHQADAEGQILARG
YLEISPDGYGFLQADLLDPQSRSVLVTAGIIKQFHLRTGDQVIGRARRPRENERYGSLVR
VEAVNGLDPEAARRRPRFDDLTPTFPDAQLVLEDPGTDDTLSLRVVDLLVPIGRGQRALI
VAPPKAGKTTLLKKIANSIVKNYPDVTVMVLLVDERPEEVTDFRESVQGAQVIASTFDEP
PQHHVRVAEFVHERARRIVEDGGHVVILLDSITRLARANNLVTPPTGRTLSGGLDSNALH
WPKRFLGAARNIREGGSLTILATALVETGSRMDDVIFEEFKGTGNAELVLSRRLEERRIF
PALDILKSGTRREELLLQPEVLKKMWLLRKVISDMDPADAMEMLLSRMGKTRNNVEFLQA
LAGG
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgagcccacaaccgccctgccatatcacgagctgcaacagaagattctgccggaa
ctgcacctgattgccgccggttacggcatcgagaactaccgcaagctgaaaaaagacgcg
ctggcgctggcgatcctggaacatcaggcggacgccgaggggcagatcctggcgcgcggc
tacctggaaatcagcccggacggctacggctttctgcaggccgatctgcttgatccccag
agccgcagcgtgctggtcacggccggcattatcaagcagtttcacctgcggaccggtgac
caggtcatcgggcgcgcccgccgcccacgtgagaacgagcgttatggttcgctggtgcgc
gtggaagcggtgaacggtctggaccctgaggccgcccgccgccgtccccgcttcgacgac
ctgactcctaccttccctgacgcccaactggtgctggaagacccggggaccgacgacacc
ctcagcctgcgtgtggtggacctgctggtgccgatcggccggggacagcgtgcactgatc
gttgcgccgcccaaggcagggaaaaccaccctgctcaagaagatcgccaactcgatcgtc
aagaactaccccgacgtcacggtgatggttctgctggtcgacgagcgcccggaagaagtc
accgacttccgcgaaagtgttcagggcgcccaggtgattgcctcaaccttcgacgagccc
ccgcagcaccatgtgcgcgtggccgagttcgtgcatgagcgggcccgccgcatcgtcgaa
gacggcggccacgtggtgatcctgctcgattcgattacccgcctggcccgtgcgaacaac
ctcgtgacaccgcccacgggccggaccctctcgggggggctggacagcaacgcgctgcac
tggcccaagcgttttctgggagcagcccgcaatatccgcgagggcggcagcctgaccatc
ctggccactgcgctggtggaaaccggcagccgtatggacgacgtgatcttcgaggaattc
aagggcaccggcaacgccgaactggttctgtcccgccgtctggaggaacgccgcatcttc
ccggccctggacatcctcaagagcggcacccgccgtgaggaactgctgctgcagcctgaa
gtcctcaagaagatgtggctgctgcgcaaggtcatcagcgatatggatccggcagacgcc
atggaaatgctgctgtcccgcatgggcaagacccgcaacaacgtcgagtttctgcaggct
ctggccggcggttaa
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