Desulfovibrio desulfuricans ATCC 27774: Ddes_0054
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Entry
Ddes_0054 CDS
T00837
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dds
Desulfovibrio desulfuricans ATCC 27774
Pathway
dds03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dds00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ddes_0054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dds03019
]
Ddes_0054
03016 Transfer RNA biogenesis [BR:
dds03016
]
Ddes_0054
Enzymes [BR:
dds01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Ddes_0054
Messenger RNA biogenesis [BR:
dds03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Ddes_0054
Transfer RNA biogenesis [BR:
dds03016
]
Prokaryotic type
tRNA degradation factors
Ddes_0054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
KH-I_KHDC4-BBP
KH_2
KH_NusA_2nd
Motif
Other DBs
NCBI-ProteinID:
ACL47974
UniProt:
B8J1X9
LinkDB
All DBs
Position
complement(70353..72584)
Genome browser
AA seq
743 aa
AA seq
DB search
MSQDIFTPTRVTCQVGGKEIIIESGRMANQAHGEVWIQCGGTVVLVTVCSQPLEFDKGFF
PLTVEYSEKMYAAGRIPGSFFRREIGRPSERETLVARLIDRPIRPLFPKGLNEDVQVLAS
VISADQENESDVLALTGASAALMLSPLPFEGPVAGGRIARVGGQFVLNPTFEQQAQSDLN
IVFAASGDALTMVEGDARFISEDVIIEALEWGRLQILPLVEIQHKLRELCGKPKMNFTPH
QDDEALVACVHELALANGMEEALRVPEKMARKDARKAVKDKVMETLKADPAWAENEAALK
AVSDILGGLEKKLVRARIVNEGTRIDGRDTTTVRPIQIQTGLLPRAHGSALFRRGETKSL
VVATLGSSTDEQRMDSLTGDVTKRFMLHYNFPPFSVGEVKPVRVSRREIGHGALAEKSLR
PVLPADADFPFTLRVVAETMESNGSSSMAAVCGGSLSLMDAGVPVSAPVAGVAMGLIKEG
EKFIVLTDILGDEDALGDMDFKIAGTAEGVTGVQMDIKITGLTTEIMRTAMQQAREGRLH
ILEEMAKAIASPRKELSRYAPQHAEVFVNPDIIRLIIGPGGKNIKAITAATGASVDIEDS
GRVSIFAPTAEALEKAREMVSYYDQRPDLGKNYNAKVRKIMEIGAIVEVLPNVEALVHVS
QLDVNRVEQPGDVARLGEDMLVKVIEINGDRIRASRKAVLLEEQGHPWNPEDTARPQRSD
RGDRGDRRGDRGGRDRRDRGDRR
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatatcttcacccccacccgcgtcacctgccaggtgggcggcaaggaaatc
atcatcgaaagcggccgcatggccaatcaggcccacggcgaagtgtggattcagtgcggc
ggcaccgtggtgcttgtcaccgtctgctcccagccgcttgaattcgacaagggcttcttt
ccccttaccgttgaatactctgaaaaaatgtacgccgccggacgcattcccggcagcttt
ttccgccgcgaaatcggccgcccgtccgagcgcgaaaccctggttgcgcgccttatcgac
cgccccatccgcccgcttttccccaaggggttgaacgaggacgtgcaggtgctggccagc
gttatttctgctgaccaggaaaacgagtccgacgtgctggccctcaccggcgcttcggcg
gccctcatgctttcgcccctgccctttgaaggccctgtggccggtggccgcattgcccgc
gtgggcggtcagtttgtgctcaaccccacctttgagcagcaggcccagagcgacctcaat
atcgtctttgccgcctccggcgacgccctcaccatggtggaaggcgacgcccgctttatt
tccgaagatgttatcatcgaggctcttgaatggggtcgcctgcagattctgcccctggtg
gaaatccagcacaagctgcgtgaactttgcggcaagcccaagatgaacttcacgccccac
caggacgatgaagccctcgtggcctgcgtgcacgagctggcccttgccaacggcatggaa
gaagccctgcgcgtgcccgaaaaaatggcccgcaaagacgcgcgcaaagccgtgaaagac
aaggtcatggaaaccctcaaggccgacccggcctgggccgaaaacgaagctgccctcaag
gccgtgtccgacatcctgggcgggcttgaaaagaagctcgtgcgtgcgcgcattgtcaac
gaaggcacgcgcattgacggccgcgacacaaccaccgtccggcccatccagatccagacc
ggccttctgccccgcgcccacggctctgccctgttccgccgcggcgaaaccaagtctctt
gtggtcgccacccttggctcctccacagacgagcagcgcatggactccctcaccggcgat
gtcaccaaacggtttatgctgcactacaactttccgcccttctctgtgggcgaagtgaag
cccgtgcgcgtgtcccgccgcgaaatcggccacggcgccctggcggaaaagtccctgcgc
cccgtgctgcccgctgacgccgactttcccttcaccctgcgcgtggtggccgaaacgatg
gaatccaacggttcttcgtccatggctgccgtgtgcggtggttcgctctccctcatggac
gccggcgtgcctgtgagcgccccggtggccggtgtggccatgggcctcatcaaggaaggc
gaaaagttcatcgttcttaccgatattctgggtgatgaagacgccctgggcgatatggac
ttcaagattgccggtactgctgaaggcgtcaccggcgtgcagatggacatcaagatcacg
ggccttaccaccgagatcatgcgcaccgccatgcagcaggcccgcgaaggccgcctgcat
atccttgaagaaatggccaaggccatcgcctcgccgcgcaaggaactttcgcgctacgcc
ccgcagcatgccgaagtgttcgtcaaccctgacatcatccgcctgatcattggtcccggc
ggcaagaacatcaaggccatcaccgcggccaccggcgcctctgtggacattgaagactcg
ggccgcgtgtccatcttcgcccccacggccgaagctctggaaaaagcccgcgaaatggtt
tcctactacgaccagcgccccgatcttggcaaaaactacaatgccaaggtgcgcaaaatc
atggaaatcggcgccattgtcgaagtgctgcccaacgtggaagcccttgtgcacgtgtcg
cagcttgacgtgaaccgcgtggagcaacccggcgacgtggcgcgcctgggcgaagacatg
ctggtcaaggtcatcgaaatcaacggcgaccgcatccgcgccagccgcaaggcggtgctg
ctggaagaacagggccatccctggaatcctgaagacaccgcccgcccgcagcgctccgac
aggggtgaccgtggtgacaggcgcggcgaccgcggcggacgtgaccgccgtgatcgtggt
gacaggcgctag
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