Desulfovibrio desulfuricans ATCC 27774: Ddes_0103
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Entry
Ddes_0103 CDS
T00837
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dds
Desulfovibrio desulfuricans ATCC 27774
Brite
KEGG Orthology (KO) [BR:
dds00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dds03016
]
Ddes_0103
Enzymes [BR:
dds01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Ddes_0103
Transfer RNA biogenesis [BR:
dds03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Ddes_0103
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
ACL48023
UniProt:
B8J228
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All DBs
Position
133985..136192
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AA seq
735 aa
AA seq
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MSDCVRYPAPGCVVEYLEGNAVQIALITEEAGGRLRLLLPNRRETRLNAPRLLPWLGPMY
SADLGKEDAVRLLEQHRKSREELAADVPVMDAWELAQGEVAIAPAQWFAELFATDPDSDQ
VAAYGRALLACKSHFRFQPPDFQVFPAETVEKRLTEEKTRLEREALIAGGAAFLRLLWDV
ACRKRDLPPPPAAGSGSGEWPAPEVAGRLEEVLRVRMTDPEGQEHETLWRTLAKGLPDVP
HLPVQLLMAWGKLPAHYNFWLDRAGYTPGDSWWMPHREEVEALAAAAAVGAMPFVQPAPE
TVSAETPLPENSKCPVPGLLPESPLPFISIDSASTRDVDDAFYVETTADGRTLTLALACP
ALYWPFGGPLDKAVLHRGTSIYLPEGDCHMLPEELGTSSYSLLAGQPRPALCVRVPVDGN
GHFGPCEVYLARVNLAANLTYSDSQAVLDALAAGESAALPDNPAATHADLLGLGLALARQ
RQQARIEGGAVIMDRPDPAIRLEGEGTEVRVHVGPDYHAPDAQMLVAEMMILASAAVAHW
ALERDVAMLHRVQDVVLPREYAGIWHTPQDMTRIMRALTPSGLEVQARPHAALGLDRYTP
VTSPLRRYPDLVNEAQVVHFLCSGQPRWSESALTELLQTLSPVLDAVGQVQRFRPRYWKL
LYFRQQGDKVWWPGVITEENDAFVSVSLQDQGMFVRGRRKLFDDRAHPGLRVDVRIGKVH
PLYNEIMILEAATVD
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgtcggattgtgtgcgctacccagcgccgggttgcgtggtggagtatctggagggcaat
gccgttcagattgcccttattactgaagaggccgggggccgtttacgccttttgctgccc
aaccggcgggaaacgcggctcaatgcgccgcgcctgctgccgtggcttggtcccatgtat
agcgcggacctgggcaaggaagacgcggtacgcctgcttgagcagcaccggaaaagccgt
gaggaactggcggctgacgtgcctgtgatggacgcgtgggaactggcgcagggcgaggtg
gctattgcccctgcgcaatggtttgccgagcttttcgccactgatccagactctgatcag
gtggcggcctacgggcgcgccctgctggcctgcaaaagccatttccgtttccagccgccg
gattttcaggtttttcctgcagaaacggtcgaaaagcggctgacggaagaaaaaacccgt
ctggagcgcgaagcccttatcgcgggcggcgcggcctttttgcgtcttttgtgggatgtg
gcctgccgcaagcgcgacctgccgcctccccctgccgcaggttccggcagtggcgaatgg
cccgcccccgaggttgccgggcgccttgaagaggtgctgcgtgtccgcatgacagacccc
gaagggcaggagcatgagaccctgtggcgaacgcttgccaagggcctgcccgatgtgccc
catttgcctgtgcagttgctgatggcctggggcaaactgcctgcccattacaatttttgg
cttgatcgcgcgggctatacccccggcgacagctggtggatgccacaccgcgaagaggtg
gaggcgcttgccgccgccgctgccgttggggccatgcccttcgtgcagcccgcaccggaa
acagtgtcggcggaaactccgctgccggaaaacagcaaatgcccggtccccggccttttg
cccgaaagcccgctgccctttatcagcatcgacagcgccagcacccgcgacgtggacgat
gccttttatgtggaaaccacggcagacgggcgcacgctcaccctggcgctggcctgccct
gccctgtactggccttttggcggtccgctggacaaggccgtgctgcaccggggaaccagc
atttacctgcccgagggcgactgccatatgctgcccgaagagctgggaacctcatcgtat
tccctgctggccggccagccgcgtcccgccctgtgtgtgcgggttccggtggacggcaac
gggcattttggcccgtgcgaggtatatctagcccgtgtgaatctggccgccaacctgacc
tacagtgacagtcaggccgtgctggacgcgctggccgccggtgagtccgccgctctgccc
gacaatccggccgctacccatgccgatttgctcggcctggggcttgccctggcgcggcag
cggcagcaggctcgcattgaaggcggggccgttattatggacaggcccgaccctgccatc
cggctggagggtgaagggaccgaggtgcgcgtgcacgtggggccggactatcatgccccg
gatgcacagatgctggtggcggaaatgatgattcttgccagcgcggccgtggcccattgg
gcgctggaacgggacgtcgccatgctgcacagggtgcaggatgtggtgctgccccgcgaa
tacgccggtatatggcataccccgcaggacatgacgcgcatcatgcgcgccctgacgcct
tcgggccttgaggtgcaggccagaccgcacgcggctttggggcttgaccgctatacgccc
gtgacttcgcccctgcgccgctatcccgaccttgtcaacgaggcgcaggtggtgcatttc
ttgtgttccgggcagcctcgctggagtgaaagcgccctgacagagcttttgcagacgctc
tcgcccgtactggatgccgtggggcaggtgcagcgcttccgcccgcgctactggaagctg
ctgtatttccgtcagcagggggacaaggtatggtggcccggcgtgatcacggaagaaaac
gatgcctttgtgagcgtgagcctgcaggaccagggtatgtttgtgcgcggcaggcggaag
ctctttgacgacagggcgcatcccggcctgcgggtggatgtgcgcatcggcaaagtacac
ccgctgtataatgagatcatgattctggaagcagccacggtggactag
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