Desulfovibrio desulfuricans ATCC 27774: Ddes_0791
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Entry
Ddes_0791 CDS
T00837
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dds
Desulfovibrio desulfuricans ATCC 27774
Pathway
dds03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dds00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ddes_0791
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dds03019
]
Ddes_0791
03009 Ribosome biogenesis [BR:
dds03009
]
Ddes_0791
Enzymes [BR:
dds01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Ddes_0791
Messenger RNA biogenesis [BR:
dds03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Ddes_0791
Ribosome biogenesis [BR:
dds03009
]
Prokaryotic type
rRNA processing factors
Ddes_0791
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ACL48699
UniProt:
B8IYX2
LinkDB
All DBs
Position
complement(926305..929535)
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AA seq
1076 aa
AA seq
DB search
MTKDQETPVTETQNSGESGQKTSKPKSRASARGKSATASEATAGQAEKTSSRPSPASKTS
SSSSPSADTPAPKASKPRAGKSTATKPVAASKSTAAKAGSAEDASAAKGAAKTKTVEKTA
TKAKSTAKPAVKSKAAAGSEAEGVEKTVKKAKAEEKTPGAASSAAAAPKRTAPKAATAKS
KQATTKSTGKPAAGTAKSGSEDAPADKTASAAAGAKTAKSATKATAGTAAPKAVAAKAPD
AKDAAPSVAQSPKSASQTGEKLPGADAAKAPADTAANKVQTAAPSAAAKDGTVAAGAPEA
GAKAASAARSRAATKVRAATARKKTTDKSADKSAAEGRVAPAQPKSTAAAATVAGAAEKI
SPPSAGATAPAMPTPPASSSAREGKDLTPPAPAAAVAEHAAEHTAGQPRSAANAEKAKPA
ASSAAHPTAAHGTVKTETAVLALAATERLALTGRNSLAIENTELLALTLTTSETVPQEEN
GAGAEASETSGEVPRRKNRRGRRGGRGRNRKKELNGENGDALAAGTSAADSVHSEDSLQN
EDEGFSAESPQAPAVSGNAPDEAAAKESPGAAPAASSKKTAPTETGKHKSKSESANARRR
MFISVLPGEQVEVALTEDGQLLEYYLDMLHQRKIKGNIYKGVIHNIDTNLQAAFVSYGAG
KNGFLQIDEIHPEYWLTHHEPAKGKKFPPIQKVLKAGQEVLVQVVKEPTGSKGAFLTTWL
SLAGRFLVLTPGQEQIGVSRKVDDEEERSRLREMMNGIDPGQGLGVIVRTVSAGTTKTTL
KNDLQYLKRVWRDIRKKATEVTAPSLIYQEPGLSERAVRDYLTDDVGEIWVDNEDVAQSI
RETVNLLFPRKSDLVRLHSDVRTSMWERFSLRRQLDQIYTREVLLPSGGRLVFDQTEALM
AVDINSGKISGKGNFEAMAHKTNMEAAETIARHLKLRDIGGQVVIDFIEMRDKKHIIEVE
KTLRSAMKNDRARHDVGRMSAFGLLELVRQRTGSSALAITMEPCPACGGTGQRRNLEWQA
LQALRELRRMLRAESKEKCVYGTSAELALYLLNHKRDSLREMEQDYGKCLEISVRP
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaagaccaagaaaccccagtgacagagacccaaaattcaggcgaatcaggccag
aagacatccaaacccaaaagccgcgcttctgcccgcggaaaaagcgccacggcttccgaa
gccactgccggccaggcggaaaaaacttcatcccgaccctcccccgcttccaagacttct
tccagttcttccccatctgccgatacgcccgcccccaaagcaagcaagcccagggcaggt
aaaagcacggccaccaagcccgttgccgcctccaaaagcacggcggcaaaggccggatca
gccgaagatgcaagcgcggcaaaaggcgcagcaaaaaccaaaacggtggaaaaaaccgct
acgaaggccaaaagcactgccaaacccgctgtaaaaagcaaagcagccgccggaagtgaa
gccgagggcgtggaaaaaaccgtaaagaaagccaaggccgaagaaaaaacgccgggggcc
gccagctctgccgccgcagctcccaagcgcacggcccccaaggccgcaaccgcaaaaagc
aaacaggcgaccacaaagagcacgggcaagcctgccgccggaaccgcaaaaagtggctct
gaagacgcgcctgccgacaagacagcctctgctgccgcaggcgccaaaactgccaaaagc
gcaaccaaggccacggccggaaccgctgctccaaaagcggtagccgcaaaagcgccggac
gccaaagatgcagcccccagcgtggcgcaatcccccaagagtgcaagccaaactggtgaa
aagctcccgggcgctgatgctgccaaggcccctgcggacacggccgcaaacaaggtacag
actgccgctcccagtgccgctgccaaggacggcactgttgccgcaggcgcacccgaagcc
ggtgcaaaagcagccagcgccgccaggtcccgcgcggcaacaaaagtgcgcgcagccact
gcccgcaaaaaaacgacagacaaaagcgctgacaagagtgctgccgaaggcagggtcgcc
ccggcgcagccgaagtcgaccgccgcagcagcaacggttgcaggcgccgctgaaaaaatt
tctccgccctccgccggtgcgactgcgccggccatgccgacccccccggcctccagcagc
gcccgtgaaggcaaagacctcacgccccctgccccggcagcagccgtagcggaacacgcg
gcagagcacacggccgggcagccccgctcggcagccaacgccgaaaaggcaaagcccgcc
gcctcttccgccgctcatccgacagccgctcacggcactgtaaaaacggaaacagcagtg
ctggccctggccgccacagaaaggctggccctgacgggacggaactctcttgccattgaa
aataccgaacttctggcgcttacgctcacaaccagcgagaccgtccctcaggaagaaaac
ggcgcaggcgccgaggcctccgaaacttccggtgaagtgccgcgccgcaagaacaggcgc
ggacggcgcggaggacgcggacggaaccgcaaaaaagaactgaacggtgaaaatggcgac
gctctggctgccgggacctctgccgccgacagcgtacacagtgaagattctttgcagaac
gaggacgaaggcttttccgcagaaagcccacaggctcccgccgtcagcggcaatgccccc
gatgaagctgccgccaaagaaagcccgggcgcagccccggcggcaagcagcaaaaaaacc
gctcccactgagaccggcaagcacaagagcaagtctgagtcggcaaacgcacggcggcgc
atgttcatcagcgttctgcccggcgaacaggtggaagtggcgttgaccgaagacggccag
ttgctggaatattacctggacatgctgcaccagcgcaaaatcaagggcaatatttacaag
ggcgtcatccacaacatcgataccaatcttcaggccgcgtttgtaagctatggcgccgga
aaaaatggctttttgcagatagacgaaatccaccccgagtactggctgacgcatcatgaa
ccggccaagggcaaaaagtttccccctatccagaaggtactcaaggccggtcaggaagtg
cttgtacaggtcgtcaaagaacccacaggcagcaagggcgcttttttgaccacatggctt
tcgctggccgggcgttttcttgtgctcactcccgggcaggagcagatcggcgtgtcgcgc
aaggtggatgatgaagaagaacgcagccgcctgcgcgaaatgatgaacggcattgatccc
ggccaggggttgggcgttattgtgcgcactgtcagcgcggggaccaccaaaacgactctc
aaaaatgacctgcaatacctcaagagggtctggcgcgacatccgtaaaaaggccacggag
gtcacggctccgtctcttatctatcaggaaccgggcctgtcggaacgcgccgtgcgcgat
tatctgacggatgacgtgggcgaaatatgggttgataacgaagacgtggcacagagcatt
cgcgaaaccgtcaacctgcttttcccccgcaaaagcgacctggtgcgcctgcacagcgat
gtgcggacatccatgtgggaacgcttcagcctgcgccgtcagctggaccagatatacacc
cgcgaggtgctgctgccctcgggcggcaggctggttttcgaccagacagaagcccttatg
gccgttgacatcaactccggcaaaatttcgggcaagggcaattttgaggcaatggcgcac
aagaccaacatggaagctgccgaaaccatagctcgccacctcaagctacgtgatatcggc
ggccaggttgtcattgacttcattgaaatgcgcgacaaaaagcatatcattgaagtggaa
aaaaccctgcgctccgccatgaaaaacgaccgtgcgcgccacgatgtgggccgcatgagt
gctttcggccttctggaactggtgcgccagcgcaccgggtcttcggctctggctatcacg
atggaaccatgcccggcctgcggcggcacagggcagcgccgtaaccttgagtggcaggct
cttcaggccctgcgcgaactacgccgcatgctgcgcgccgagagcaaggaaaaatgcgtt
tacggcacgtctgccgaactggctctgtatctgctcaaccacaagcgcgacagcttgcgc
gaaatggagcaggactacggcaaatgtctggaaatatccgttcgtccgtaa
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