Desulfovibrio desulfuricans ATCC 27774: Ddes_1085
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Entry
Ddes_1085 CDS
T00837
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily
KO
K03086
RNA polymerase primary sigma factor
Organism
dds
Desulfovibrio desulfuricans ATCC 27774
Pathway
dds02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dds00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Ddes_1085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dds03021
]
Ddes_1085
Transcription machinery [BR:
dds03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Ddes_1085
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Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
ACL48991
UniProt:
B8IZR4
LinkDB
All DBs
Position
complement(1270700..1272469)
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AA seq
589 aa
AA seq
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MSSLKDIQQIQSLIAKGKGAGFLTFEEVNKALPVEMSTPEQFEEIIGIFEQLEIVIVDSE
KDGKKISATASESDEEITDSSLDLSEDEDTADYSSRSTDPVRMYLREMGAVPLLDRDGEV
VIAKKIEMGEQDVLYALVEVPVAVEELINVGEDLRQNRIKLKDVVKTIEEDDPSEDEMNQ
RSRVILLLDEIKQTFKKKRKIYKKLDVCTCMDRRVTAVQKEIICFKEEIVTRLRDIKLEK
TLIDRIIETVEDYVRQMHNCQRDLSAYILATGRTQAEIQAMFDGLEQREINPMDAARDLK
LSVDELFSFKEMIIGKIEILNRLQEKCCHNVTDLEEVLWRIKRGNTAAMRAKQELIRSNL
RLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIA
DQARTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIAERMEYPVEKVKKVLKIAKEP
ISLETPIGDEEDSSLGDFIEDKKAVAPAEEVINTKLSEQLAAVLADLTPREEQVLRKRFG
IAEKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPVRSQPLRSYYEN
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtcttaaagatatccagcagattcaatcacttattgccaaaggcaagggtgcg
ggctttttgacctttgaagaggtcaacaaagcgctgcccgttgaaatgagcacgcccgag
cagtttgaagagatcataggcatctttgaacagctggaaatcgttattgtggactcagag
aaggacggaaaaaaaatttcggccactgcctctgaatctgacgaggaaataaccgacagt
tcccttgatctgtctgaggacgaagatactgcggactattcttcccgcagcacagacccc
gtgcgcatgtacttgcgcgaaatgggggctgttcccctgcttgaccgcgatggtgaagtt
gttatcgccaaaaagattgaaatgggcgaacaagacgtgctttatgcccttgttgaagtt
cctgtggcagttgaagagctgatcaatgtgggcgaagacctgcgccagaaccgcatcaag
ctcaaggatgtggtaaaaaccattgaagaagacgaccccagcgaagatgaaatgaaccag
cgttcgcgcgtcatcctgctgctggacgaaatcaagcagaccttcaagaaaaaacgcaag
atctataaaaaacttgatgtctgcacctgcatggatcgccgcgtcaccgccgtgcagaaa
gaaatcatctgcttcaaggaagaaattgttacccgcctgcgtgatatcaagctggaaaaa
accctcattgaccgcattattgaaacggttgaggactacgtgcgccagatgcacaactgc
cagcgtgacctttctgcctacattcttgccaccggccgtacccaggcggaaattcaggcc
atgtttgacggccttgagcagcgcgaaatcaatccgatggatgccgcccgcgacctcaag
ctcagtgtggacgaactcttttccttcaaggaaatgatcatcggcaagattgaaatcctc
aaccgcctgcaggaaaaatgctgccataacgtcacggaccttgaagaggtcctgtggcgc
atcaaacgcggcaatacggcggccatgcgcgccaagcaggaacttatccgctccaacctg
cgccttgtggtttccattgcaaaaaaatataccaatcgtggtctccagttcctcgacctt
attcaggaaggcaatatcggcctcatgaaagctgtggataagtttgagtatcagcgcggc
tataaattctctacgtatgccacatggtggatccggcaggccattacccgcgccattgcc
gaccaggcgcgcaccatccgtatccccgtgcatatgattgaaaccatcaacaagctcata
cgcacatcgcgctaccttgtgcaggagctgggccgcgaccccacgcccgaagaaatcgcc
gaacgtatggaatacccagtggaaaaggtcaaaaaggtactcaaaatcgccaaagaaccc
atttctctggaaactcctatcggcgatgaagaagattcaagcctgggcgattttattgaa
gataaaaaagctgtggccccggcagaagaagttatcaacaccaagctgtcggaacagctg
gccgcagtgctggcagacctcacccctcgtgaggagcaggttttgcgcaaacgcttcggc
attgctgaaaagagtgatcacacccttgaagaagtgggcaagctctttaacgtgacccgc
gaacgtatccggcagatcgaggccaaggctttacgcaaactgcgtcatcccgtgcgcagc
cagcccctgcgctcttattacgaaaactga
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