Desulfovibrio desulfuricans ATCC 27774: Ddes_1456
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Entry
Ddes_1456 CDS
T00837
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dds
Desulfovibrio desulfuricans ATCC 27774
Pathway
dds03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dds00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ddes_1456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dds03021
]
Ddes_1456
03019 Messenger RNA biogenesis [BR:
dds03019
]
Ddes_1456
Transcription machinery [BR:
dds03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Ddes_1456
Messenger RNA biogenesis [BR:
dds03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Ddes_1456
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
AAA
ATPase_2
OB_RNB
AAA_25
Spore_III_AA
S1CSD-TOTE-2
AAA_14
Motif
Other DBs
NCBI-ProteinID:
ACL49358
LinkDB
All DBs
Position
1744049..1745344
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AA seq
431 aa
AA seq
DB search
MRKKKATPTLLTDSALSLTDLKTRSMQELMDLAEQYEIENASSMRKQELIFALLSTCASQ
NGAIYGDGVLEILPDGFGFLRSPLCSYMPGPDDIYVSPSQIRRFSLRKGDIVSGQIRPPK
EGERYFALLKVTEIGFEPPEHAKNLVLFDNLTPIYPDHQLVMENGEKNLSNRVIDIMAPI
GRGQRGLIVAPPRTGKTILLQSLANAINANNPEVYLIVLLIDERPEEVTDMERTVKKAEV
ISSTFDEPPQRHVQVCEMVLEKAKRLVERKRDVVILLDSITRLGRAYNAVTPSSGRVLSG
GLDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMEIYLDR
HLSEKRVFPAIDINRTGTRKEDLLLPEDVLNRVWILRKILAPMSAIDSMEFLLDKMRGTK
SNKDFMNAMGK
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaaaaagaaagctacccccacactgttgacagacagcgccctgagcctcactgac
ctgaagacccgcagcatgcaggaactcatggatctggctgaacagtacgagattgagaat
gccagttccatgcgaaagcaagagcttatcttcgcactgctttccacctgcgcctcgcag
aacggtgccatctacggcgacggcgtgctggagatactgccggatggctttggctttctg
cgctcgcccctttgcagctacatgccgggaccagacgacatatatgtgtcgccatcgcaa
atccgacgcttctccctgcgtaaaggtgacattgtttccgggcagatccgcccgcccaag
gaaggggagcgctacttcgccctgctgaaggttaccgagatcggctttgaaccgccggaa
catgccaaaaatctcgtcctgtttgacaaccttacccccatctaccccgaccatcagctc
gtcatggaaaatggcgagaaaaatctttccaaccgcgtcatcgacatcatggcccccatt
ggtcgtggtcagcgcggccttattgttgcccccccccgcacaggcaaaaccattctgctc
caatcgcttgccaatgccatcaacgccaataatccggaagtctaccttatcgtgctgctg
attgacgagcgccccgaggaagtgacggatatggaacgtacggtcaaaaaggccgaagta
atcagttccacgtttgacgagccgccgcagcgccatgtgcaggtctgtgaaatggtgctt
gaaaaggccaaacgccttgtagaacgcaagcgcgatgttgttatcctgcttgactcgatc
acccgccttggcagggcctacaacgccgtaaccccctcgtccgggcgtgtactttccggt
gggctggacgccaacgccctgcagcggcccaaacgctttttcggtgcggcccgtaacatc
gaagaaggcggcagcctgaccattatcgctaccgccctgattgataccggttcacgcatg
gacgaagtaatctttgaagagttcaagggtacaggcaatatggaaatctacctggaccgc
catctttcggaaaagcgcgtgttccctgccatcgatatcaaccgcaccggcacccgcaag
gaagacctgctgctgcccgaagacgtgctcaaccgcgtctggatactgcgcaagattctg
gcccccatgtctgccattgacagtatggaattcctgctggacaagatgcgcggcaccaaa
tccaataaagactttatgaacgccatgggcaaatag
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