Desulfovibrio desulfuricans ATCC 27774: Ddes_1693
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Entry
Ddes_1693 CDS
T00837
Name
(GenBank) RNA binding metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
dds
Desulfovibrio desulfuricans ATCC 27774
Pathway
dds03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dds00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ddes_1693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dds03019
]
Ddes_1693
Messenger RNA biogenesis [BR:
dds03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Ddes_1693
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
Hydrolase_3
Motif
Other DBs
NCBI-ProteinID:
ACL49591
UniProt:
B8J1I3
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All DBs
Position
complement(2044016..2045575)
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AA seq
519 aa
AA seq
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MDPLVIAALLASVVLGAALGAVVCKRSTTKRIGDADDLAKRIVAEARKEAQAQKKEILLQ
GQDDLFNQKRELENEFKEREREVKTRERKLEEMSGRLEEKLEKATAKEHELLASEKDLAR
KERQLSETEMFLQTRIEEQEQRLAQISGFTAEEAKVQLFMEVEAKTRHESAKMIRQIEME
ARETADRKAKEILCNVIQRYAGDYVNEQTVTAVTLPSEDMKGRIIGREGRNIRALESATG
VDLIIDDTPETVILSAYSPLRRQVAKMALERLIQDGRIHPARIEDIVQKCEQELDAQVRE
VGEQATFDAGVHGIHPEIVRLLGQLRYRTSFTQNVLQHSLEVSALCGMMAAELGMDVKKA
KRAGLLHDIGKAVDHEVEGPHALIGADLAKKYNESQEIIHAIAAHHEDQRPSTALAVLVQ
AADSISGARPGARKELLENYVKRLEDLEGIATSFDGVSKAYAIQAGREIRVMVNSDQVDD
DTTYVLCKDIAEKIEKNLTYPGQIRVTVIRERRAVGLAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggacccattagttatagcggcgctgctcgcgtctgtggtgctgggggcggcactgggc
gcggtggtgtgcaaacggtctacaaccaagcgtatcggcgacgccgatgacctggccaaa
cgcattgtggccgaggcccgcaaagaagcgcaggcccagaaaaaagaaattttgctacag
ggacaggacgacctgttcaaccagaaacgcgagctggaaaatgaattcaaggagcgcgag
cgcgaggtcaagacccgcgagcgcaagcttgaggaaatgagcgggcgccttgaggaaaag
cttgaaaaagccaccgccaaggagcacgaactgctcgcttcagaaaaagatctggctcgt
aaagaacggcagctttcagaaacagaaatgttcctgcaaacccgcattgaggagcaggag
cagcgcctggcgcagatttcgggttttactgctgaagaagccaaggtgcagctttttatg
gaagtggaggcgaagacgcggcacgaatcggccaagatgatccggcagatcgaaatggaa
gcccgcgaaaccgcagaccgcaaagccaaagaaattctctgtaacgtcattcagcgctat
gcgggcgactatgtgaacgagcagaccgtcaccgccgtcaccctgcccagcgaagatatg
aaaggccgtatcattggccgtgaagggcgcaatatccgcgctctcgagtctgccaccggc
gtggacctcattattgacgatacccctgagacagtcatcctttccgcctacagcccgtta
cgccgccaggtcgccaagatggcgctggagcgtcttattcaggacgggcgcatccacccc
gcgcgcattgaagacattgttcagaagtgcgagcaggaactggatgcccaggtgcgcgaa
gtgggcgagcaggccaccttcgatgcgggcgtgcacggcatacaccctgaaatcgttcgc
cttctcggccagttgcgctaccgcacttcctttacgcaaaatgtgctgcagcattcgctt
gaggtgtcggccctgtgtggcatgatggcggcagagcttggtatggacgtgaagaaagcc
aagcgtgccgggttgctgcatgacatcggcaaggccgtggaccacgaggttgaagggccg
catgcccttatcggggcggatctggcgaaaaagtataacgaaagccaggaaatcatccat
gccatcgccgcccaccacgaagatcagcgcccttcaacggctctggctgtgctggtgcag
gctgcggactccatttccggcgcacgccccggcgcacgcaaggaactgctggaaaactat
gtgaagaggctggaagacctggagggcatcgccaccagttttgatggcgtcagcaaggct
tacgctatccaggccgggcgtgaaatccgcgtgatggttaactccgatcaggtcgatgat
gacacaacctatgtcctttgcaaggatatagctgaaaaaattgaaaaaaatctgacatat
cccggacagatccgcgtaacggtcatccgtgagcggcgtgccgtaggccttgccaagtag
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