Desulfovibrio desulfuricans ATCC 27774: Ddes_1800
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Entry
Ddes_1800 CDS
T00837
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
dds
Desulfovibrio desulfuricans ATCC 27774
Pathway
dds03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dds00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Ddes_1800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dds03400
]
Ddes_1800
Enzymes [BR:
dds01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Ddes_1800
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Ddes_1800
DNA repair and recombination proteins [BR:
dds03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Ddes_1800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
zinc-ribbons_6
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ACL49697
UniProt:
B8J1T9
LinkDB
All DBs
Position
complement(2174868..2175809)
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AA seq
313 aa
AA seq
DB search
MPELPEVETVARTLRPHVQGRIIADAQVLRPTSQHPLSLPLQDLRGCRIADVVRRGKLLL
LLLDPTEAEKTCVRGMQNLCLAVHLRMTGRLMTYAAKTSPGTHTRCILDLKALPATAGGQ
AAAECGPAGGAGVPGAEDCLTSGERRLFFDDVRAFGTMLAGTPEMFARWPFWRELGPEPL
DITEAAFAASIAAKRSAIKAVLLDQKMLAGVGNIYADESLFAAGIDPRRKGSELTRLQAD
RLLQCLRDVLLLSISQCGSSIRDYRDADGNVGAFQNTFAVYGRGGQKCKTCGSLLEKAKV
AGRSTVFCPQCQH
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagctgccggaagtggagactgttgcccgcaccctgcggccccatgtgcagggt
cgcattattgctgacgcgcaggttttgcgccccaccagccagcatcccctgagcctgccc
ctgcaggacctgcggggatgccgcatcgctgacgtagtgcgccggggcaaactgctcttg
ctgctgcttgacccaaccgaagcggaaaaaacgtgtgtacgcggcatgcaaaacctgtgt
ctggccgtgcacttgcgcatgacggggcgccttatgacctatgcggcgaaaacgtcgcca
ggcacgcatacccgctgtatccttgatctgaaagcattgcccgccacggctggcgggcag
gccgcggcggaatgtgggcctgccggaggagcaggcgtgcccggggctgaagactgtttg
acgtccggcgagcgtcgcctgttttttgacgacgtgcgcgccttcggaaccatgctggca
ggcacgccggagatgtttgcccgctggcctttctggcgggagcttggccccgagcctctg
gatattacggaagcggcctttgccgcaagcattgccgcaaaaaggtctgccatcaaggct
gtgctgctggatcagaaaatgctggccggggtaggcaatatctatgcggacgaaagcctg
tttgccgcaggcattgacccgcgccggaaaggttctgagctgacgcggcttcaggccgac
cgccttttgcaatgcctgcgggatgtgcttttactgtccatctcccagtgcggcagttcc
attcgtgattacagggatgccgacggcaatgtgggggcctttcagaatacctttgccgtg
tacgggcgcggcgggcaaaagtgcaagacttgcggaagccttctggaaaaggccaaagtg
gctggcaggagtacagttttttgcccgcagtgtcagcattag
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