Denitrobacterium detoxificans: AAY81_04445
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Entry
AAY81_04445 CDS
T04382
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ddt
Denitrobacterium detoxificans
Pathway
ddt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAY81_04445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddt03019
]
AAY81_04445
Enzymes [BR:
ddt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AAY81_04445
Messenger RNA biogenesis [BR:
ddt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AAY81_04445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
GCD14
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
ANE22496
LinkDB
All DBs
Position
complement(1065822..1067351)
Genome browser
AA seq
509 aa
AA seq
DB search
MTSFNELGLSELGLAAVDALGYNEPTPVQQQAIPAILQGRDVIAAAKTGTGKTAAFSLPS
MDKIGHARHGQGPLMLVITPTRELAMQIREVCTTIATKTHHHVTCVVGGLSYGPQIDALS
RGTDVLIATPGRLVDLINQGAADLSQVETVVLDEADRMLDMGFLPDMKRIIKQCPVDRQT
LLFSATIDSAIQKNMKNLLKDPVFVEIAHKGETADTIEQYVIHVDQRAKIDLLISLLNER
GGTRIIVFARTRHRVDNTVKKLRRAGFKCAPIHSDRSQNQRKRALDDFAAGKIDIIVATD
VLARGIDVSDVYYVVNLDMPMQAEDYVHRIGRTGRAGEKGFAVSFISPDTKKLLRAVEKL
IGISIPTMEVKSFDASASEAALADKATRKAAKEDPELAAAAKEDKSRKKSKAKRERKRNE
EAPSPHKTRGTAKKQGKKNQKAAQAAQKNGHKSAEEPARKKNRNAAPKGRNGKGDFRSGK
PQAKGSKNDFRPGRAQRRTRAKQHSKSAR
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgacatcatttaacgaattgggcctgagcgaactgggcctcgcggccgtcgacgctctt
ggctacaatgagcccacgcccgtgcagcagcaggccattcccgcgatcctgcaaggacgc
gatgttatcgctgccgcaaagaccggtacgggcaaaacggcggcattcagcctgccctct
atggacaagatcggccatgcccgtcacggccagggcccgctcatgctcgtcatcacgcct
acccgcgagctcgccatgcagatccgcgaagtgtgcaccaccatcgccaccaagacgcac
catcatgtcacctgcgtcgtaggcggcctttcctatggcccccaaattgacgcgctctcg
cgcggcaccgacgtgctcatcgccacgcccggccgcctggtcgacctgatcaaccagggc
gccgccgacctgagccaggtggaaaccgtggtgctcgacgaagccgaccgcatgcttgac
atgggctttctgccggacatgaagcgcatcatcaaacagtgccccgtcgaccgccagacg
ctgctcttctcggccaccatcgattcggccatccagaagaacatgaagaacctgctgaag
gaccccgttttcgtcgagattgcccataagggcgaaaccgccgacaccatcgaacagtac
gtcatccacgtagaccagcgcgcaaagatcgacctgcttatctcgttgctgaacgaacgc
ggcggcacgcgcatcatcgtattcgcacgtacgcgtcatcgcgtggacaacacggtcaag
aagctgcgtcgtgctggattcaagtgcgcgcccatccattccgaccgcagtcagaaccag
cgcaagcgtgcgctcgatgacttcgctgcaggcaagatcgacatcatcgtcgccaccgac
gtgctcgcacgcggcatcgacgtatccgatgtgtactacgtcgtaaatctggacatgccc
atgcaagccgaagactacgtccaccgcattggccgtacgggccgcgcgggcgaaaagggc
tttgccgtttcgttcatctcgcccgacaccaagaagctgctgcgcgccgtggaaaagctc
atcggcatcagcattcccaccatggaggtaaagtcgttcgacgcttccgcaagcgaagca
gcacttgccgacaaggccacgcgcaaggcagccaaggaagaccccgagctcgctgccgcg
gcaaaggaagacaagtcgcgcaagaagtcgaaggcaaagcgcgaacgcaagcgcaacgag
gaagctccctcgcctcacaagacgcgtggcaccgccaagaagcagggcaagaagaaccag
aaggctgcacaggcagcccagaagaacggccacaagagcgccgaagagcccgcacgcaag
aagaaccgcaacgcagcccccaagggccgaaacggcaagggcgatttccgctcgggcaag
ccccaggccaagggttcgaaaaacgacttccgccccggcagggcgcaacgtcggaccagg
gccaagcagcactccaagagcgcacgctag
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