Denitrobacterium detoxificans: AAY81_06845
Help
Entry
AAY81_06845 CDS
T04382
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ddt
Denitrobacterium detoxificans
Pathway
ddt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAY81_06845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ddt03021
]
AAY81_06845
03019 Messenger RNA biogenesis [BR:
ddt03019
]
AAY81_06845
Transcription machinery [BR:
ddt03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AAY81_06845
Messenger RNA biogenesis [BR:
ddt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AAY81_06845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
SAP
Spore_III_AA
AAA_25
Rho_N
NACHT
OB_RNB
Mor
AAA
S1CSD-TOTE-2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ANE22885
UniProt:
A0A172RZ02
LinkDB
All DBs
Position
complement(1613636..1615357)
Genome browser
AA seq
573 aa
AA seq
DB search
MSETEQQPVAEAAEAPKRKPRARRASKQVDTPVPEGAEASSQAEKPKKTAKAAKADKAEK
APKQDDAPAQSSDAAKSPEGDSSSAGERTPRRHSRVQTGSRSQKQQNGKKGNGQSNGNGQ
NNGGKNNNRHQRRGRNNRNERREVAPKTSLEELSKLKVAELREKAAELEIDSKGLLKADL
VQAVYDASVKKEGFVEVEGVLDILSDGYGFLRTEGYLPGEHDCYVATSLIRRNHLRKGDY
VRGQVRPARENEKFAAIQHIHAVNGVPLEEMGRRPHFKDLTPVYPDERLNMEHGRTTTTS
RVIDLVAPIGKGQRGLIVSPPKAGKTTVLKQIAAAISANNPEVHLMCLLVDERPEEVTDM
QRSIKGEVIASTFDMPSDNHIAVAEMVIERAKRLVEMGEDVVILLDSITRLARAYNLAQP
ASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTILASALIDTGSKMDEVIFEEFKGTG
NMELKLDRNLADRRIYPAIDPVASGTRKEDLLLDPQEAPLIWAVRRILANMNNTERAMDM
LIKSLKQTETNQEFLLRTAKKAQGRRSDDKFEL
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaaccgaacaacagccggtagcggaagccgccgaagcgccgaagcgcaagcct
cgcgctcgtcgtgcttccaagcaggttgatactcctgtgcctgaaggcgccgaggcatcg
agccaggccgaaaagccgaagaagaccgcaaaggcggccaaggccgataaggccgaaaag
gctccgaagcaggacgatgcccccgcgcagtcttccgacgccgcgaagtctccagagggc
gattcctcttccgcgggtgagcgcacgccgcgccgtcattctcgcgtgcagacgggctct
cgttcccagaagcagcagaacggcaagaagggcaatggccagagcaacggcaacggtcag
aacaatggcggcaagaacaacaaccgccatcagcgtcgtggccgcaataaccgcaacgaa
cgtcgcgaagtcgcgcccaagaccagcctcgaagagctttcgaagctgaaggtggccgag
ctgcgcgagaaggctgccgagctcgagatcgattcgaagggcttgctgaaggccgatttg
gttcaggctgtgtacgatgccagcgtgaagaaggagggcttcgtcgaggtcgaaggcgtt
ctcgacatcctttccgatggctatggctttttgcgcaccgagggctatctgcccggcgag
cacgactgctatgtggctacctcgctcattcgccgcaaccatctgcgcaagggcgattac
gtccgtggccaggtgcgccccgcgcgtgagaacgagaagttcgccgccatccagcatatt
cacgccgtgaatggcgtgccgctggaggaaatgggccgtcgtcctcatttcaaggacctt
acgcctgtgtatcccgacgagcgtctgaacatggaacatggccgcactaccaccacgtcg
cgcgtcatcgacctggtcgctcccatcggcaagggccagcgtggcctgatcgtgtcgcct
ccgaaggccggcaagaccaccgtgctgaagcagattgcggctgctatctcggcgaacaac
cccgaagtgcaccttatgtgcctgctggtcgacgagcgccccgaagaagttaccgacatg
cagcgctccatcaagggcgaggttattgcctccacgttcgatatgccctccgacaaccac
atcgcggttgcggaaatggtcatcgagcgtgcaaagcgcctggtggaaatgggcgaagac
gtcgtcattctgcttgacagcatcacgcgtctggcgcgcgcttacaacctggcgcagccc
gccagcggtcgcatcctttccggtggcgtcgactccacggctctgtatccgcccaagcgc
ttcctgggtgctgcccgtaacatcgaacacggtggcagcctgaccattctggcttccgcc
ctcatcgatacgggttcgaagatggacgaagtcatcttcgaggagttcaagggcacaggc
aatatggagctcaagctcgaccgcaacctggctgatcgtcgcatctacccggccatcgac
ccggtggccagcggcacgcgcaaggaagacctgctgctcgatccgcaggaggcgccgctc
atctgggccgttcgccgcatccttgcgaatatgaacaacacggaacgcgccatggacatg
ctcatcaagtccttgaagcaaacggaaaccaaccaggaattcctgctgcgcactgccaag
aaggcgcagggtcgccgttccgacgacaagttcgaactgtag
DBGET
integrated database retrieval system
