Desulfolithobacter dissulfuricans: GF1_13130
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Entry
GF1_13130 CDS
T08652
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ddu
Desulfolithobacter dissulfuricans
Pathway
ddu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GF1_13130 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ddu03021
]
GF1_13130 (rho)
03019 Messenger RNA biogenesis [BR:
ddu03019
]
GF1_13130 (rho)
Transcription machinery [BR:
ddu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
GF1_13130 (rho)
Messenger RNA biogenesis [BR:
ddu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GF1_13130 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
ATPase_2
AAA
AAA_22
NACHT
S1CSD-TOTE-2
AAA_25
Spore_III_AA
ResIII
Mor
Motif
Other DBs
NCBI-ProteinID:
BCO08937
UniProt:
A0A915XJQ1
LinkDB
All DBs
Position
1468064..1469311
Genome browser
AA seq
415 aa
AA seq
DB search
MNPADLKNKKINELVSMAAKLNIEGYTGMRKQELIFAILKARAEGDGKLRGSGVLEVLQD
GFGFLRAPDYNYLPGPDDIYVSPSQIRRLNLRTGDTIEGEVRAPKDNERYFALLKVDTIN
YEPAEASRNKTLFVNLTPMYPEERINLEWEPDNYSTRVMNIVAPLGKGQRGLIVAPPRTG
KTMLMQKIANAIVHNHKEITLIVLLIDERPEEVTDMKRNVDAEVVSSTFDEPPQRHIQVA
EMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVTPASGKILSGGVEANALHRPKRFFGA
ARNIEEGGSLTILATALIETGSRMDDVIFEEFKGTGNMEIVLDRKMADRRIYPAIDIQKS
GTRKEDLLLSADELNKVWILRKILSSMNPADAMEFLLDRMRQTKTNEEFFASMNR
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgaatccggccgatctgaaaaacaaaaaaattaacgaactcgtctccatggctgccaag
ctcaatatcgagggctataccggcatgcgcaaacaggaactcatctttgccattctgaag
gcccgggccgagggcgacggcaagctgcggggcagcggtgttcttgaagtgctgcaggac
ggttttggtttcctgcgggctccggattacaactatctgccgggtccggatgatatctat
gtctctccgtcacagatcaggcggctcaacctgcgcaccggtgacaccatcgaaggcgag
gttcgcgcgcccaaggacaatgaacgctattttgcgctcctcaaggttgataccatcaat
tacgagccggccgaggcgtcccgcaacaagaccctgtttgtcaacctcactcccatgtat
cccgaagagcggatcaacctggagtgggaaccggacaactattccaccagggtgatgaat
atcgtcgctccgctgggtaaggggcagcgcggcctgatcgtggcaccgccgcggaccggt
aagaccatgctcatgcagaagatcgccaacgccatcgtccataatcacaaggagatcacc
ctcattgtcctgctcatcgacgagcggcccgaggaggtcaccgacatgaagcgcaatgtg
gacgccgaggtggtcagctccacctttgacgaaccgccccagcggcatatccaggtggcg
gaaatggtgatcgaaaaggccaagcggctggtggagcataagcgtgatgtcgtcattctg
cttgactccatcacccggctggcccgcgcctataacacggtgaccccggcctcgggcaag
atcctctccggtggtgtggaggccaacgccctgcaccggcccaagcggttcttcggtgcg
gcccggaacatcgaggagggcggcagtctgaccattctggccactgcactcatcgagacc
ggcagccgcatggacgatgtcatcttcgaggagttcaagggtaccggtaacatggagatc
gtccttgaccgcaagatggcggaccgtagaatctacccggccatcgatattcagaagtcc
ggcaccaggaaggaagacctgctcctgtcggccgatgaactcaacaaggtctggattctg
cgcaagattctctcgtccatgaatccggccgatgccatggaatttctcctggacaggatg
cgccagaccaagaccaacgaggaattcttcgcctccatgaaccgatga
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