Desulfolithobacter dissulfuricans: GF1_13540
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Entry
GF1_13540 CDS
T08652
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ddu
Desulfolithobacter dissulfuricans
Pathway
ddu03030
DNA replication
ddu03430
Mismatch repair
ddu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ddu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GF1_13540 (dnaE)
03430 Mismatch repair
GF1_13540 (dnaE)
03440 Homologous recombination
GF1_13540 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ddu03032
]
GF1_13540 (dnaE)
03400 DNA repair and recombination proteins [BR:
ddu03400
]
GF1_13540 (dnaE)
Enzymes [BR:
ddu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GF1_13540 (dnaE)
DNA replication proteins [BR:
ddu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GF1_13540 (dnaE)
DNA repair and recombination proteins [BR:
ddu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GF1_13540 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
VWA_CoxE
tRNA_anti_2
CcmE
T2SSK
Motif
Other DBs
NCBI-ProteinID:
BCO08978
UniProt:
A0A915TZX3
LinkDB
All DBs
Position
complement(1509085..1512597)
Genome browser
AA seq
1170 aa
AA seq
DB search
MSAPFVHLHVHTQYSMLDGAIRLGDLINKAKEYEMESVAITDHGAMYGALEFYTKAKKAG
LKPIIGCEFYIAQHSRLKKNQNAGHNFHLVLLAMNETGYRNLMKLASIAQTEGFYYKPRI
DREVLFAHQEGLIALSACLHGEIAWRITHNDPDGARKSAQELQKVFGDRLYFEIQENGIP
EQTIANRGLMELAGELGIKLVATNDCHYLSREESYAHEVLLCIQTGRTINDPKRFKFSTD
QLYFKSPEEMAAQFSYCPEAVTNTLEVAERCNLELKFGEHHFPIFPVPENETLETIFEKA
CWEGLEERLADLRELQEVSPELEKQYRDRLAMEIGVIQEMGFSGYFLIVADFITWAKSQK
IPVGPGRGSGAGSLAAFCMHITDIDPIPYGLIFERFLNVERKSMPDFDVDFCKDRRDEVI
AYVRKKYGGDKHVAQIVAYGSMKARAVIRDVGRVLEIPLPVVDRIAKLIPEELKITLDKA
IDKEPRLREAMKDDAVRELLTVAQTLEGLSRHKTIHAAGVVISPRPMVEFLPVCVGPNKE
VLTQYDMKYTEMTGLIKFDFLGLKTLTVIDRALKLIKLDIGTDVELKKIPMDDPKTYELL
CRGDSLGVFQLESDGMRELLIKMKPEQFSDLIALVALYRPGPLDSGMVDTFVETKHGRRP
PEYPLPQIKEVLEETYGVIVYQEQVMKIANILAGYSLGDADILRRAMGKKIPEVMEEERE
KFMAGARKLNVPEDKAKYIFDLMAKFAGYGFNKSHSAAYALIAYQTAYLKAHYPAQFLAA
LLSCDVDNTDKVVKYINECHLHDIDVLPPDINESFQDFTVINDRIRFGLAAVKNVGGAAL
ESIIAEREENGPYKSLGDFCSRIDSSKVNRKVIESLIKAGAFDTMEGHRAQLLEALDQAL
EQAKAVQRDRLSGQMNLFSLGSSSKTQKTTEVQLPDVEEWPKLKKLAFEKETIGFFLTGH
PLEGVIDDIRMVADTDIAGLENYRDGQAVRLGGLIQNYKEHKSRKGDRMAFAVLEDMSSS
VEVVIFPSSFEHCSHLLGGDDPVIVLGKVQQEERGAKIIAQTVHTLPDALEKYTEKASIK
LRADRTTRGHMERLKDMLYRFHGTTPVHLTLHFDGRGEVDIEILKDLTIRPCREFFQELE
QTLGYPALTMRMKTPELRERGRRNNNGYRK
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgtccgctccctttgtccatcttcatgtccacacccagtactccatgctggacggcgcc
atccgtctgggtgacctcatcaacaaggccaaagaatatgaaatggagtccgtggccatc
accgaccacggcgccatgtacggggctctggaattctataccaaggcaaagaaagccggc
ctcaaacccatcatcggctgcgaattctacattgcccagcactcgcggctgaaaaaaaac
cagaacgcaggccataactttcatctggtcctgctggccatgaacgagaccggctaccgc
aacctgatgaaactggcctccattgcccagaccgaaggtttttactacaagccgcgcatt
gacagggaagtgctctttgcccaccaggagggactcattgccctttccgcctgcctgcac
ggcgagattgcctggcgcatcacccataacgatccagacggggccaggaaaagcgcccag
gagttacagaaagtctttggggatcggctctattttgaaatccaggaaaacggtattccg
gagcaaaccattgccaaccggggattgatggagcttgccggcgagctgggtatcaagctg
gtggccaccaatgactgtcattacctgagccgggaggaatcgtatgcccacgaggtcctg
ctctgcatccagaccggccggaccatcaatgatcccaaacggttcaagttctccaccgac
cagctctatttcaagtctcccgaggagatggcggcccagttcagctactgtcccgaagcg
gttaccaataccctggaggtggccgagcggtgcaacctggaactcaagttcggtgaacat
cattttcccatcttcccggtgccggaaaacgaaactctggagacgatctttgaaaaggcc
tgctgggaaggcctggaagaacggctcgccgatctgcgcgaactgcaggaggtctccccg
gagcttgagaagcagtaccgggaccgattggccatggaaatcggggttatccaggaaatg
ggcttttccggctacttcctcatcgtggccgacttcatcacctgggccaagtcgcagaag
atcccggtggggccgggccgcggttccggagccgggtctctggccgccttctgcatgcac
atcaccgacatcgaccccatcccctacggactgatctttgagcgctttctcaatgtggag
cgaaaatccatgcccgactttgacgtggatttctgcaaggatcggcgggatgaggtgatc
gcctatgtgcggaaaaaatacggcggggacaaacacgtggcccagatcgtggcctatggg
tccatgaaggcccgggccgtgatccgcgacgtgggccgggtcctggagatccccctgccg
gtggtggaccggatcgccaagctcatccccgaggagctcaagatcaccctggacaaggcc
attgacaaggaaccgcgcctgcgcgaggccatgaaggacgatgcggtacgcgaactgctg
accgtggcccagaccctggaggggctgtcacggcacaagaccatccacgccgccggggtg
gtgatctccccccgacccatggtggagtttctgccggtctgcgtgggtcccaacaaggag
gtcctgacccagtacgacatgaagtataccgagatgaccggactgataaagttcgacttt
ctcggcctcaagactctgaccgtcatcgaccgggcactcaagctcatcaagctcgatatc
gggaccgatgtggaacttaaaaagatccccatggacgatcccaagacctacgagctgctg
tgccggggcgacagcctgggcgtgttccagcttgagagcgacggcatgcgcgaactcctg
atcaagatgaagccggagcagttctccgacctcattgcgctcgtggcactctaccggccc
gggcctctcgactcgggcatggtggacacctttgtcgaaaccaagcatggccggcgaccg
cccgaatacccgctgccccagatcaaggaggtgctggaagagacctatggcgtaatcgtg
taccaggaacaggttatgaaaatcgccaatatcctggccggttactccctgggtgacgca
gatatcctacgccgggccatgggcaagaaaattcccgaagtcatggaagaggaacgggaa
aagttcatggccggggcccgcaagctcaacgtgcccgaagacaaggccaagtatattttc
gacctcatggccaagtttgcaggctacggcttcaacaagtcccattcggcagcctatgcg
ctgatcgcctaccagaccgcctacctcaaggcccactacccggcccagttcctggccgcc
ctgctctcctgcgacgtggacaacacggataaggtggtcaagtacatcaacgaatgccac
ctgcacgacatcgatgtcctgccaccggatataaacgagtcgttccaggacttcactgtt
atcaatgaccgcatccgctttggcctggcagccgtgaaaaatgtcggcggcgcagctctg
gaatccattattgccgaacgggaggagaatggcccctacaagtcgcttggggatttctgc
tcccggatcgactccagcaaggtaaaccgcaaggtgatcgaaagcctgatcaaggccgga
gcctttgacaccatggaaggacaccgggcccagctcctggaggcccttgaccaggccctg
gaacaggccaaggccgtacagcgcgaccggctctccgggcagatgaacctgttcagcctg
ggcagcagttcaaagacccaaaagactacggaggtgcagttgccggatgtggaggagtgg
ccgaaactgaaaaaactggcatttgaaaaggagaccattggcttcttcctcaccggtcat
ccgctggaaggggttatcgatgacattcgcatggtggcagataccgacatcgccgggctg
gaaaactaccgggacggtcaggccgttcgcctgggcggattgattcagaattacaaggaa
cataaatcaagaaagggcgaccgcatggcctttgccgttctcgaggacatgtcctcctcg
gtggaggtcgtgattttcccttcctcctttgagcactgctcccatctgctcggcggtgac
gacccggtgatcgttcttggcaaggtgcagcaggaggaacggggcgccaagattatcgcc
cagacggtgcacaccctgccagacgccctggaaaagtatactgaaaaggcctcgatcaag
ctgcgggccgaccggaccacccgtggccacatggaacgtctcaaagacatgctgtaccgg
ttccacggcaccaccccggtgcatctgacccttcacttcgacggccgcggcgaggtggac
atcgaaatcctcaaggacctcaccatccgtccctgccgcgaattttttcaggagctggaa
cagacccttggctaccctgccctgaccatgcgcatgaaaacccctgagcttcgggaacgg
ggtcggcgcaacaacaacggctaccggaaataa
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